miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31750 3' -58.1 NC_006938.1 + 12654 0.74 0.228404
Target:  5'- gGCCCUCGGCCGCcuCG-CGGAA-GGCg -3'
miRNA:   3'- gUGGGAGCUGGCGc-GCuGCCUUgUCG- -5'
31750 3' -58.1 NC_006938.1 + 46282 0.76 0.159148
Target:  5'- gGCCUUggcaaUGGCCGCGCGGCGGAcguugAUGGCg -3'
miRNA:   3'- gUGGGA-----GCUGGCGCGCUGCCU-----UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 31718 1.11 0.000534
Target:  5'- aCACCCUCGACCGCGCGACGGAACAGCu -3'
miRNA:   3'- -GUGGGAGCUGGCGCGCUGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 22052 0.67 0.581228
Target:  5'- aCGCCacgucagcagggagCGGCUGCGCGGCGGccugGGCa -3'
miRNA:   3'- -GUGGga------------GCUGGCGCGCUGCCuug-UCG- -5'
31750 3' -58.1 NC_006938.1 + 29248 0.66 0.622342
Target:  5'- aACCUgcacgaggcaaUCGGCCGCGCcguuuGCGGc-CAGCg -3'
miRNA:   3'- gUGGG-----------AGCUGGCGCGc----UGCCuuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 4424 0.66 0.643503
Target:  5'- uGCCCUgGgcaaguuuGCCGUGCGcuuugACGGGuccauCAGCg -3'
miRNA:   3'- gUGGGAgC--------UGGCGCGC-----UGCCUu----GUCG- -5'
31750 3' -58.1 NC_006938.1 + 48021 0.73 0.277798
Target:  5'- uCACgCUCGACaagaccuCGgGCGGCGcGGACGGCa -3'
miRNA:   3'- -GUGgGAGCUG-------GCgCGCUGC-CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 21655 0.66 0.632923
Target:  5'- --aCgUgGGCCGCGCG-CGGGucCAGCu -3'
miRNA:   3'- gugGgAgCUGGCGCGCuGCCUu-GUCG- -5'
31750 3' -58.1 NC_006938.1 + 26814 0.66 0.632923
Target:  5'- gCACUCUCGugGCCGUcaaGGCGGucaugAACGGCa -3'
miRNA:   3'- -GUGGGAGC--UGGCGcg-CUGCC-----UUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 18184 0.71 0.369311
Target:  5'- aCGCCCU---CCGCGCGGCcGGAcacCAGCu -3'
miRNA:   3'- -GUGGGAgcuGGCGCGCUG-CCUu--GUCG- -5'
31750 3' -58.1 NC_006938.1 + 51802 0.7 0.377738
Target:  5'- gACCaacCGGCUGCGCGACacagagcaGGAGCuGCa -3'
miRNA:   3'- gUGGga-GCUGGCGCGCUG--------CCUUGuCG- -5'
31750 3' -58.1 NC_006938.1 + 10533 0.66 0.626574
Target:  5'- uCACCCUCacggacgaguacauGCCGCuGCuGACGGAcgguccCAGCa -3'
miRNA:   3'- -GUGGGAGc-------------UGGCG-CG-CUGCCUu-----GUCG- -5'
31750 3' -58.1 NC_006938.1 + 53100 0.66 0.622342
Target:  5'- aCGCCCUUGACauCaCGGCGGaGugGGCg -3'
miRNA:   3'- -GUGGGAGCUGgcGcGCUGCC-UugUCG- -5'
31750 3' -58.1 NC_006938.1 + 24372 0.66 0.611769
Target:  5'- gCACCCUC-AgCGCGUGuccauccUGGAGCAGg -3'
miRNA:   3'- -GUGGGAGcUgGCGCGCu------GCCUUGUCg -5'
31750 3' -58.1 NC_006938.1 + 13641 0.69 0.478458
Target:  5'- -gUCaCUCGGCCGCGCuGACaugcucauGGAgcGCGGCa -3'
miRNA:   3'- guGG-GAGCUGGCGCG-CUG--------CCU--UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 15469 0.68 0.488272
Target:  5'- uGgCCUCGACCaggaGCGggcUGACGcGGGCGGCa -3'
miRNA:   3'- gUgGGAGCUGG----CGC---GCUGC-CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 44107 0.68 0.49818
Target:  5'- cCACCaaCGGCaucaGgGUGACGG-ACAGCa -3'
miRNA:   3'- -GUGGgaGCUGg---CgCGCUGCCuUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 11075 0.68 0.508177
Target:  5'- --aCCUCGG-CGCGC--UGGAGCGGCa -3'
miRNA:   3'- gugGGAGCUgGCGCGcuGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 20698 0.67 0.548948
Target:  5'- aACCagggacaGGCCGCGCGACaGAugGGg -3'
miRNA:   3'- gUGGgag----CUGGCGCGCUGcCUugUCg -5'
31750 3' -58.1 NC_006938.1 + 37290 0.66 0.622342
Target:  5'- aCACCCUgGAagGUGuCGACGaGAGCAucGCa -3'
miRNA:   3'- -GUGGGAgCUggCGC-GCUGC-CUUGU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.