Results 61 - 74 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31750 | 3' | -58.1 | NC_006938.1 | + | 21655 | 0.66 | 0.632923 |
Target: 5'- --aCgUgGGCCGCGCG-CGGGucCAGCu -3' miRNA: 3'- gugGgAgCUGGCGCGCuGCCUu-GUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 26814 | 0.66 | 0.632923 |
Target: 5'- gCACUCUCGugGCCGUcaaGGCGGucaugAACGGCa -3' miRNA: 3'- -GUGGGAGC--UGGCGcg-CUGCC-----UUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 4424 | 0.66 | 0.643503 |
Target: 5'- uGCCCUgGgcaaguuuGCCGUGCGcuuugACGGGuccauCAGCg -3' miRNA: 3'- gUGGGAgC--------UGGCGCGC-----UGCCUu----GUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 10533 | 0.66 | 0.626574 |
Target: 5'- uCACCCUCacggacgaguacauGCCGCuGCuGACGGAcgguccCAGCa -3' miRNA: 3'- -GUGGGAGc-------------UGGCG-CG-CUGCCUu-----GUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 53100 | 0.66 | 0.622342 |
Target: 5'- aCGCCCUUGACauCaCGGCGGaGugGGCg -3' miRNA: 3'- -GUGGGAGCUGgcGcGCUGCC-UugUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 37290 | 0.66 | 0.622342 |
Target: 5'- aCACCCUgGAagGUGuCGACGaGAGCAucGCa -3' miRNA: 3'- -GUGGGAgCUggCGC-GCUGC-CUUGU--CG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 29248 | 0.66 | 0.622342 |
Target: 5'- aACCUgcacgaggcaaUCGGCCGCGCcguuuGCGGc-CAGCg -3' miRNA: 3'- gUGGG-----------AGCUGGCGCGc----UGCCuuGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 24372 | 0.66 | 0.611769 |
Target: 5'- gCACCCUC-AgCGCGUGuccauccUGGAGCAGg -3' miRNA: 3'- -GUGGGAGcUgGCGCGCu------GCCUUGUCg -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 23667 | 0.66 | 0.599104 |
Target: 5'- --aCCUCGugCcgaagcaGCGCGACGucggccaGGGCGGCa -3' miRNA: 3'- gugGGAGCugG-------CGCGCUGC-------CUUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 51468 | 0.67 | 0.59068 |
Target: 5'- aCAUCCUCG-UCGCGgcCGGagcCGGGGCAGUc -3' miRNA: 3'- -GUGGGAGCuGGCGC--GCU---GCCUUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 44873 | 0.67 | 0.59068 |
Target: 5'- cCACCUUggcaCGGCuCcCGCGAcCGGGACAGUc -3' miRNA: 3'- -GUGGGA----GCUG-GcGCGCU-GCCUUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 8354 | 0.67 | 0.59068 |
Target: 5'- gGCCagauCUgGAUCGCgGCGGCGGAcgcGCAGg -3' miRNA: 3'- gUGG----GAgCUGGCG-CGCUGCCU---UGUCg -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 33657 | 0.67 | 0.568676 |
Target: 5'- --aCCUCGACCaguggacccagguGCGCGACacccacgaGGGcCAGCa -3' miRNA: 3'- gugGGAGCUGG-------------CGCGCUG--------CCUuGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 35563 | 0.73 | 0.271103 |
Target: 5'- cCGCCUUgccaagggcgcgaCGACCGCGCGACuGGA--GGCa -3' miRNA: 3'- -GUGGGA-------------GCUGGCGCGCUG-CCUugUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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