miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31751 3' -53.6 NC_006938.1 + 24380 0.66 0.800911
Target:  5'- ----aGCGCGu-GUCCAUccugGAGCAGGc -3'
miRNA:   3'- cuugaCGCGCuuCAGGUA----CUCGUCCc -5'
31751 3' -53.6 NC_006938.1 + 13200 0.67 0.79116
Target:  5'- gGGACagGCGCGuccGGUCCGagacGGGCGGGc -3'
miRNA:   3'- -CUUGa-CGCGCu--UCAGGUa---CUCGUCCc -5'
31751 3' -53.6 NC_006938.1 + 29662 0.68 0.740117
Target:  5'- --uCU-CGCGGAGgggcUCCAUGguGGCAGGGa -3'
miRNA:   3'- cuuGAcGCGCUUC----AGGUAC--UCGUCCC- -5'
31751 3' -53.6 NC_006938.1 + 39265 0.68 0.739063
Target:  5'- cGAGCaccuCGUGGAggcgcuuguugccGUCCAUGAGCAGcGGg -3'
miRNA:   3'- -CUUGac--GCGCUU-------------CAGGUACUCGUC-CC- -5'
31751 3' -53.6 NC_006938.1 + 51809 0.68 0.729532
Target:  5'- cGGCUGCGCGAca--CA-GAGCAGGa -3'
miRNA:   3'- cUUGACGCGCUucagGUaCUCGUCCc -5'
31751 3' -53.6 NC_006938.1 + 5924 0.68 0.697232
Target:  5'- -cGCUGCGCuccuuuguGAaccAGUCCAUaGAGgAGGGc -3'
miRNA:   3'- cuUGACGCG--------CU---UCAGGUA-CUCgUCCC- -5'
31751 3' -53.6 NC_006938.1 + 32243 0.72 0.480419
Target:  5'- uGGACUuCGCGcAGUUCGUcGGCAGGGg -3'
miRNA:   3'- -CUUGAcGCGCuUCAGGUAcUCGUCCC- -5'
31751 3' -53.6 NC_006938.1 + 61071 0.73 0.440394
Target:  5'- cGAGCUGCGCcuccagGAAGuacUCCGcguUGAGCAGGu -3'
miRNA:   3'- -CUUGACGCG------CUUC---AGGU---ACUCGUCCc -5'
31751 3' -53.6 NC_006938.1 + 17752 0.75 0.349322
Target:  5'- cGGGCUGCGCGGAGaaCGUG-GCAcGGGc -3'
miRNA:   3'- -CUUGACGCGCUUCagGUACuCGU-CCC- -5'
31751 3' -53.6 NC_006938.1 + 1280 0.75 0.349322
Target:  5'- --cCUGCGCgucGAAGcCCAgGAGCAGGGc -3'
miRNA:   3'- cuuGACGCG---CUUCaGGUaCUCGUCCC- -5'
31751 3' -53.6 NC_006938.1 + 1188 0.76 0.301477
Target:  5'- aGACUGCGCGucGUCCAccUGAGCcgAGGc -3'
miRNA:   3'- cUUGACGCGCuuCAGGU--ACUCG--UCCc -5'
31751 3' -53.6 NC_006938.1 + 5564 0.76 0.286693
Target:  5'- cGAACguggaGC-CGGAGUCCAgcgacugGAGCAGGGa -3'
miRNA:   3'- -CUUGa----CGcGCUUCAGGUa------CUCGUCCC- -5'
31751 3' -53.6 NC_006938.1 + 31327 1.11 0.001334
Target:  5'- cGAACUGCGCGAAGUCCAUGAGCAGGGu -3'
miRNA:   3'- -CUUGACGCGCUUCAGGUACUCGUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.