miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31752 5' -53.7 NC_006938.1 + 60145 0.66 0.836175
Target:  5'- cCUCGaCCCAguCCCGGUGGACaccguUGGGcGCg -3'
miRNA:   3'- -GAGCaGGGU--GGGCUACUUG-----ACCU-UGa -5'
31752 5' -53.7 NC_006938.1 + 39486 0.66 0.827227
Target:  5'- aCUUGUCCCuCCCGAUGAAUc------ -3'
miRNA:   3'- -GAGCAGGGuGGGCUACUUGaccuuga -5'
31752 5' -53.7 NC_006938.1 + 4787 0.66 0.818075
Target:  5'- cCUCGgccaaCCGCCuCGcUGAuCUGGAACa -3'
miRNA:   3'- -GAGCag---GGUGG-GCuACUuGACCUUGa -5'
31752 5' -53.7 NC_006938.1 + 63375 0.67 0.769609
Target:  5'- gUCG-CCCACgCGGUGGAcCUGGGuGCa -3'
miRNA:   3'- gAGCaGGGUGgGCUACUU-GACCU-UGa -5'
31752 5' -53.7 NC_006938.1 + 10709 0.67 0.759449
Target:  5'- -gUGUaCCGCuuGAaGAGCUGGAACg -3'
miRNA:   3'- gaGCAgGGUGggCUaCUUGACCUUGa -5'
31752 5' -53.7 NC_006938.1 + 5605 0.7 0.630648
Target:  5'- -cCGUCCCACCCGuc---CUGGAAg- -3'
miRNA:   3'- gaGCAGGGUGGGCuacuuGACCUUga -5'
31752 5' -53.7 NC_006938.1 + 57362 0.71 0.565145
Target:  5'- cCUCGaCCaGCuCCGAguUGGACUGGAGCa -3'
miRNA:   3'- -GAGCaGGgUG-GGCU--ACUUGACCUUGa -5'
31752 5' -53.7 NC_006938.1 + 46632 0.75 0.326293
Target:  5'- uUCGUCCCugCCacagguGGUGGcCUGGGACUg -3'
miRNA:   3'- gAGCAGGGugGG------CUACUuGACCUUGA- -5'
31752 5' -53.7 NC_006938.1 + 31081 1.07 0.0024
Target:  5'- gCUCGUCCCACCCGAUGAACUGGAACUc -3'
miRNA:   3'- -GAGCAGGGUGGGCUACUUGACCUUGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.