Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31753 | 5' | -58.1 | NC_006938.1 | + | 39395 | 0.71 | 0.31243 |
Target: 5'- cUCUCGGgcucCCCGCUcucuUCUCaACGGAGGACa -3' miRNA: 3'- -AGAGCC----GGGUGGu---AGGG-UGCCUCUUG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 40940 | 0.68 | 0.478469 |
Target: 5'- gCUCGGCUCGacCCGcCCCGCGauGGGAAUg -3' miRNA: 3'- aGAGCCGGGU--GGUaGGGUGC--CUCUUG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 43869 | 0.68 | 0.478469 |
Target: 5'- ---gGGUCCugCAgaaCCCuCGGAGGACa -3' miRNA: 3'- agagCCGGGugGUa--GGGuGCCUCUUG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 48181 | 0.74 | 0.215057 |
Target: 5'- gCUCGGCaaGCCcaAUCCCACGGGcGACa -3' miRNA: 3'- aGAGCCGggUGG--UAGGGUGCCUcUUG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 52814 | 0.7 | 0.351589 |
Target: 5'- cUCUCGGCagGCCAUUggcaCCACGGAcGGCa -3' miRNA: 3'- -AGAGCCGggUGGUAG----GGUGCCUcUUG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 53247 | 0.66 | 0.591986 |
Target: 5'- cCUUGGCaCCGCCcUCCCaggcGCGGAa--- -3' miRNA: 3'- aGAGCCG-GGUGGuAGGG----UGCCUcuug -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 54155 | 0.73 | 0.244254 |
Target: 5'- gCUCGGCCCA--GUCCCACGuGGAccGCa -3' miRNA: 3'- aGAGCCGGGUggUAGGGUGCcUCU--UG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 54296 | 0.66 | 0.591986 |
Target: 5'- -aUCGGCaagCGCCGUUCCAacggUGGAGAcgACa -3' miRNA: 3'- agAGCCGg--GUGGUAGGGU----GCCUCU--UG- -5' |
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31753 | 5' | -58.1 | NC_006938.1 | + | 56401 | 0.74 | 0.220646 |
Target: 5'- gCUCGGCCauuCGCCGUCUCcaGCGG-GAGCg -3' miRNA: 3'- aGAGCCGG---GUGGUAGGG--UGCCuCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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