miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31753 5' -58.1 NC_006938.1 + 30577 1.1 0.000538
Target:  5'- cUCUCGGCCCACCAUCCCACGGAGAACg -3'
miRNA:   3'- -AGAGCCGGGUGGUAGGGUGCCUCUUG- -5'
31753 5' -58.1 NC_006938.1 + 29225 0.79 0.101693
Target:  5'- gCUCGGCgUgACCAucucUCCCugGGAGAACg -3'
miRNA:   3'- aGAGCCG-GgUGGU----AGGGugCCUCUUG- -5'
31753 5' -58.1 NC_006938.1 + 48181 0.74 0.215057
Target:  5'- gCUCGGCaaGCCcaAUCCCACGGGcGACa -3'
miRNA:   3'- aGAGCCGggUGG--UAGGGUGCCUcUUG- -5'
31753 5' -58.1 NC_006938.1 + 56401 0.74 0.220646
Target:  5'- gCUCGGCCauuCGCCGUCUCcaGCGG-GAGCg -3'
miRNA:   3'- aGAGCCGG---GUGGUAGGG--UGCCuCUUG- -5'
31753 5' -58.1 NC_006938.1 + 23799 0.73 0.238162
Target:  5'- --cCGGCCCucuCCAcUCCCacacagaaACGGAGAACg -3'
miRNA:   3'- agaGCCGGGu--GGU-AGGG--------UGCCUCUUG- -5'
31753 5' -58.1 NC_006938.1 + 54155 0.73 0.244254
Target:  5'- gCUCGGCCCA--GUCCCACGuGGAccGCa -3'
miRNA:   3'- aGAGCCGGGUggUAGGGUGCcUCU--UG- -5'
31753 5' -58.1 NC_006938.1 + 22955 0.72 0.27667
Target:  5'- --cCGGUCCGCCAgCUC-CGGGGAGCg -3'
miRNA:   3'- agaGCCGGGUGGUaGGGuGCCUCUUG- -5'
31753 5' -58.1 NC_006938.1 + 39395 0.71 0.31243
Target:  5'- cUCUCGGgcucCCCGCUcucuUCUCaACGGAGGACa -3'
miRNA:   3'- -AGAGCC----GGGUGGu---AGGG-UGCCUCUUG- -5'
31753 5' -58.1 NC_006938.1 + 52814 0.7 0.351589
Target:  5'- cUCUCGGCagGCCAUUggcaCCACGGAcGGCa -3'
miRNA:   3'- -AGAGCCGggUGGUAG----GGUGCCUcUUG- -5'
31753 5' -58.1 NC_006938.1 + 5947 0.7 0.38534
Target:  5'- --gCGGUCCGCuCGUUCCagGCGGAGAAg -3'
miRNA:   3'- agaGCCGGGUG-GUAGGG--UGCCUCUUg -5'
31753 5' -58.1 NC_006938.1 + 39124 0.69 0.41202
Target:  5'- -aUCGGCuCCGCCAaggUCCCGaccgaGGuGGAACg -3'
miRNA:   3'- agAGCCG-GGUGGU---AGGGUg----CC-UCUUG- -5'
31753 5' -58.1 NC_006938.1 + 30500 0.69 0.41202
Target:  5'- aCUCGG-CCACCcuguacagGUCgCCACGGAcgGAGCu -3'
miRNA:   3'- aGAGCCgGGUGG--------UAG-GGUGCCU--CUUG- -5'
31753 5' -58.1 NC_006938.1 + 13644 0.69 0.43043
Target:  5'- aCUCGGCCgCGCUgacaugCUCAUGGAGcGCg -3'
miRNA:   3'- aGAGCCGG-GUGGua----GGGUGCCUCuUG- -5'
31753 5' -58.1 NC_006938.1 + 11199 0.69 0.434169
Target:  5'- cCUCGGCUgAcCCGUgCCACGGgccgguuguugaucgAGAGCa -3'
miRNA:   3'- aGAGCCGGgU-GGUAgGGUGCC---------------UCUUG- -5'
31753 5' -58.1 NC_006938.1 + 12643 0.68 0.458925
Target:  5'- gUCUCGGUCCaggcccucgGCCGcCUCGCGGAaGGCg -3'
miRNA:   3'- -AGAGCCGGG---------UGGUaGGGUGCCUcUUG- -5'
31753 5' -58.1 NC_006938.1 + 40940 0.68 0.478469
Target:  5'- gCUCGGCUCGacCCGcCCCGCGauGGGAAUg -3'
miRNA:   3'- aGAGCCGGGU--GGUaGGGUGC--CUCUUG- -5'
31753 5' -58.1 NC_006938.1 + 43869 0.68 0.478469
Target:  5'- ---gGGUCCugCAgaaCCCuCGGAGGACa -3'
miRNA:   3'- agagCCGGGugGUa--GGGuGCCUCUUG- -5'
31753 5' -58.1 NC_006938.1 + 29 0.68 0.478469
Target:  5'- gCUCGa-CCACCGUCgaCGCGGAGAGu -3'
miRNA:   3'- aGAGCcgGGUGGUAGg-GUGCCUCUUg -5'
31753 5' -58.1 NC_006938.1 + 24417 0.68 0.498414
Target:  5'- -gUCGGCgacauccuCUACCGUCUCACGuGGGACa -3'
miRNA:   3'- agAGCCG--------GGUGGUAGGGUGCcUCUUG- -5'
31753 5' -58.1 NC_006938.1 + 10271 0.67 0.508525
Target:  5'- -gUCGcGCCUGaCAUgCCCugGGAGGACu -3'
miRNA:   3'- agAGC-CGGGUgGUA-GGGugCCUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.