Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31755 | 3' | -58.8 | NC_006938.1 | + | 3698 | 0.66 | 0.527101 |
Target: 5'- aGCgACGGUGCGCGuucauCCUGGaCGAGGc -3' miRNA: 3'- -UG-UGCCACGCGUcac--GGACCcGUUCC- -5' |
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31755 | 3' | -58.8 | NC_006938.1 | + | 13345 | 0.71 | 0.27528 |
Target: 5'- -gGCGGUGUcgacaaagccaGcCGGUGCCUGGGCGGa- -3' miRNA: 3'- ugUGCCACG-----------C-GUCACGGACCCGUUcc -5' |
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31755 | 3' | -58.8 | NC_006938.1 | + | 22069 | 0.79 | 0.085571 |
Target: 5'- -aGCGGcUGCGCGGcgGCCUGGGCAAa- -3' miRNA: 3'- ugUGCC-ACGCGUCa-CGGACCCGUUcc -5' |
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31755 | 3' | -58.8 | NC_006938.1 | + | 27858 | 0.98 | 0.00333 |
Target: 5'- gACACGGUGCGCAGUGCCUGGGaCAGGa -3' miRNA: 3'- -UGUGCCACGCGUCACGGACCC-GUUCc -5' |
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31755 | 3' | -58.8 | NC_006938.1 | + | 35385 | 0.67 | 0.466807 |
Target: 5'- -gACGGgaGUGCuGUGUgUaGGGCAGGGg -3' miRNA: 3'- ugUGCCa-CGCGuCACGgA-CCCGUUCC- -5' |
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31755 | 3' | -58.8 | NC_006938.1 | + | 37926 | 0.66 | 0.558337 |
Target: 5'- -aGCGG-GCGguG-GCCaGGGCGGuGGa -3' miRNA: 3'- ugUGCCaCGCguCaCGGaCCCGUU-CC- -5' |
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31755 | 3' | -58.8 | NC_006938.1 | + | 58569 | 0.66 | 0.527101 |
Target: 5'- cGCAuCGGUgggGCGCucguGgaugGCCUGGGCAcugucccccuGGGc -3' miRNA: 3'- -UGU-GCCA---CGCGu---Ca---CGGACCCGU----------UCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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