miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31755 5' -58.5 NC_006938.1 + 28110 0.66 0.591986
Target:  5'- -gCCcgaUCUGGUGGCGGAUcauGGCGUCg -3'
miRNA:   3'- gaGGag-GGACCGCUGCCUG---UCGUAGa -5'
31755 5' -58.5 NC_006938.1 + 61728 0.67 0.528999
Target:  5'- cCUCCU-CCUGGaCGG-GGACGGCGaCUa -3'
miRNA:   3'- -GAGGAgGGACC-GCUgCCUGUCGUaGA- -5'
31755 5' -58.5 NC_006938.1 + 18367 0.67 0.488394
Target:  5'- gCUCCUUCaaccagaUGGCGGCGGACAaggacaacgGCAa-- -3'
miRNA:   3'- -GAGGAGGg------ACCGCUGCCUGU---------CGUaga -5'
31755 5' -58.5 NC_006938.1 + 62222 0.7 0.3682
Target:  5'- --gCUCUCUGGCGACGG-CGGCcuugCUg -3'
miRNA:   3'- gagGAGGGACCGCUGCCuGUCGua--GA- -5'
31755 5' -58.5 NC_006938.1 + 44106 0.7 0.366514
Target:  5'- -aCCaCCaacggcaucagGGUGACGGACAGCAUCa -3'
miRNA:   3'- gaGGaGGga---------CCGCUGCCUGUCGUAGa -5'
31755 5' -58.5 NC_006938.1 + 48035 0.71 0.31243
Target:  5'- -aCCUCg--GGCGgcGCGGACGGCAUCa -3'
miRNA:   3'- gaGGAGggaCCGC--UGCCUGUCGUAGa -5'
31755 5' -58.5 NC_006938.1 + 55498 0.71 0.311682
Target:  5'- gUCCUUggCCUGGCGGUGGAuguccguCAGCAUCa -3'
miRNA:   3'- gAGGAG--GGACCGCUGCCU-------GUCGUAGa -5'
31755 5' -58.5 NC_006938.1 + 29605 0.72 0.27667
Target:  5'- gCUCCUCgUUGaucCGGCGGAgCAGCAUCUc -3'
miRNA:   3'- -GAGGAGgGACc--GCUGCCU-GUCGUAGA- -5'
31755 5' -58.5 NC_006938.1 + 52309 0.72 0.263308
Target:  5'- aUCCUCaucGGCGGCcaGGGCGGCAUCg -3'
miRNA:   3'- gAGGAGggaCCGCUG--CCUGUCGUAGa -5'
31755 5' -58.5 NC_006938.1 + 60307 0.75 0.161248
Target:  5'- gCUCCUCCucCUGGUGAUugaaGGGCGGCAUUg -3'
miRNA:   3'- -GAGGAGG--GACCGCUG----CCUGUCGUAGa -5'
31755 5' -58.5 NC_006938.1 + 27892 1.07 0.000833
Target:  5'- gCUCCUCCCUGGCGACGGACAGCAUCUc -3'
miRNA:   3'- -GAGGAGGGACCGCUGCCUGUCGUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.