miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31756 5' -52.1 NC_006938.1 + 31007 0.66 0.922631
Target:  5'- cGGgaugUCCGGGuGCGUCGUCCgcaggcaggacaucaUGGAg -3'
miRNA:   3'- -CCagaaAGGUUCcUGCAGCAGG---------------ACCU- -5'
31756 5' -52.1 NC_006938.1 + 23094 0.66 0.900881
Target:  5'- uGGUCguccgUCgGAGGAgUGUCGUCCccgacacGGAc -3'
miRNA:   3'- -CCAGaa---AGgUUCCU-GCAGCAGGa------CCU- -5'
31756 5' -52.1 NC_006938.1 + 16345 0.66 0.893886
Target:  5'- aGUCcg-CCAc-GACGUUGUUCUGGAa -3'
miRNA:   3'- cCAGaaaGGUucCUGCAGCAGGACCU- -5'
31756 5' -52.1 NC_006938.1 + 28504 0.67 0.889562
Target:  5'- gGGUUggacaugccgaggUCCAGGGagGCGUCcuccUCCUGGAu -3'
miRNA:   3'- -CCAGaa-----------AGGUUCC--UGCAGc---AGGACCU- -5'
31756 5' -52.1 NC_006938.1 + 36432 0.67 0.879106
Target:  5'- ----gUUCC-AGGACGaCGUCCUuGGAa -3'
miRNA:   3'- ccagaAAGGuUCCUGCaGCAGGA-CCU- -5'
31756 5' -52.1 NC_006938.1 + 23201 0.67 0.871331
Target:  5'- -uUCgaUCCGAGGGagccCGUCCUGGGu -3'
miRNA:   3'- ccAGaaAGGUUCCUgca-GCAGGACCU- -5'
31756 5' -52.1 NC_006938.1 + 10848 0.68 0.819729
Target:  5'- cGUCc-UCCAGGucCGUggCGUCCUGGAu -3'
miRNA:   3'- cCAGaaAGGUUCcuGCA--GCAGGACCU- -5'
31756 5' -52.1 NC_006938.1 + 5117 0.68 0.819729
Target:  5'- aGGUC--UCCGcguuGACGUCcUCCUGGAu -3'
miRNA:   3'- -CCAGaaAGGUuc--CUGCAGcAGGACCU- -5'
31756 5' -52.1 NC_006938.1 + 51560 0.7 0.740323
Target:  5'- uGUCcUUCgGAGcGACGUCGacgcCCUGGAu -3'
miRNA:   3'- cCAGaAAGgUUC-CUGCAGCa---GGACCU- -5'
31756 5' -52.1 NC_006938.1 + 40286 0.71 0.675861
Target:  5'- ------cCCuuaaaauGGGAUGUCGUCCUGGAc -3'
miRNA:   3'- ccagaaaGGu------UCCUGCAGCAGGACCU- -5'
31756 5' -52.1 NC_006938.1 + 56915 0.71 0.653922
Target:  5'- uGGUCUU----GGaGACGUCGUCCUcGGAc -3'
miRNA:   3'- -CCAGAAagguUC-CUGCAGCAGGA-CCU- -5'
31756 5' -52.1 NC_006938.1 + 5471 0.78 0.310667
Target:  5'- uGGUCUcgUCCGuuuggaAGGGCGUCGUCgUGGc -3'
miRNA:   3'- -CCAGAa-AGGU------UCCUGCAGCAGgACCu -5'
31756 5' -52.1 NC_006938.1 + 27127 1.12 0.001911
Target:  5'- uGGUCUUUCCAAGGACGUCGUCCUGGAa -3'
miRNA:   3'- -CCAGAAAGGUUCCUGCAGCAGGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.