Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31757 | 3' | -55.1 | NC_006938.1 | + | 59545 | 0.66 | 0.761058 |
Target: 5'- gGCUUGAGGaUGCGuuucaACUCGU-CCAgGu -3' miRNA: 3'- gCGAACUCC-GCGC-----UGAGCAaGGUgUu -5' |
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31757 | 3' | -55.1 | NC_006938.1 | + | 30258 | 0.67 | 0.686773 |
Target: 5'- gCGCUUGucGGCGCGugUCca--CACGAu -3' miRNA: 3'- -GCGAACu-CCGCGCugAGcaagGUGUU- -5' |
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31757 | 3' | -55.1 | NC_006938.1 | + | 26407 | 0.92 | 0.019008 |
Target: 5'- gCGCUaGuGGCGCGACUCGUUCCACAAu -3' miRNA: 3'- -GCGAaCuCCGCGCUGAGCAAGGUGUU- -5' |
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31757 | 3' | -55.1 | NC_006938.1 | + | 28673 | 0.68 | 0.587942 |
Target: 5'- uCGCggcUGGGaGUGgGGCUCGUUCCuCGAg -3' miRNA: 3'- -GCGa--ACUC-CGCgCUGAGCAAGGuGUU- -5' |
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31757 | 3' | -55.1 | NC_006938.1 | + | 2870 | 0.67 | 0.653922 |
Target: 5'- aCGCUccGAGGuCGCGACUggCGggCCGCc- -3' miRNA: 3'- -GCGAa-CUCC-GCGCUGA--GCaaGGUGuu -5' |
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31757 | 3' | -55.1 | NC_006938.1 | + | 50428 | 0.66 | 0.740323 |
Target: 5'- gGCUUaucgGAGGCGCGGCU-GUcaUCCAgAc -3' miRNA: 3'- gCGAA----CUCCGCGCUGAgCA--AGGUgUu -5' |
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31757 | 3' | -55.1 | NC_006938.1 | + | 49064 | 0.66 | 0.761058 |
Target: 5'- gGCgggGAGGgGCGACUCuccCCGCu- -3' miRNA: 3'- gCGaa-CUCCgCGCUGAGcaaGGUGuu -5' |
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31757 | 3' | -55.1 | NC_006938.1 | + | 29535 | 0.66 | 0.761058 |
Target: 5'- aCGCUgagaGAGGcCGuCGACgCGggugUCCGCGAg -3' miRNA: 3'- -GCGAa---CUCC-GC-GCUGaGCa---AGGUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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