Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31757 | 5' | -59 | NC_006938.1 | + | 780 | 0.66 | 0.5736 |
Target: 5'- aGCU-GCCGAUgCGGaggucuccaguGUUGCCAGcCGGUGu -3' miRNA: 3'- -UGAgCGGCUG-GCU-----------CAACGGUC-GCCAC- -5' |
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31757 | 5' | -59 | NC_006938.1 | + | 36297 | 0.66 | 0.5736 |
Target: 5'- gACUCGUCgGGCCGAccUGCCAcGUGGc- -3' miRNA: 3'- -UGAGCGG-CUGGCUcaACGGU-CGCCac -5' |
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31757 | 5' | -59 | NC_006938.1 | + | 61769 | 0.66 | 0.5736 |
Target: 5'- --aCGCC-ACCGAGcucagcgcUGCCAacGCGGUGg -3' miRNA: 3'- ugaGCGGcUGGCUCa-------ACGGU--CGCCAC- -5' |
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31757 | 5' | -59 | NC_006938.1 | + | 32002 | 0.66 | 0.5736 |
Target: 5'- aGCUCGaCGugUGccacGgaGCCAGUGGUGg -3' miRNA: 3'- -UGAGCgGCugGCu---CaaCGGUCGCCAC- -5' |
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31757 | 5' | -59 | NC_006938.1 | + | 29792 | 0.66 | 0.521704 |
Target: 5'- ---gGCuCGGCCGAGggGCCAGCccGGa- -3' miRNA: 3'- ugagCG-GCUGGCUCaaCGGUCG--CCac -5' |
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31757 | 5' | -59 | NC_006938.1 | + | 2944 | 0.66 | 0.520684 |
Target: 5'- aGCUCGCCGccCCGAuggcgaaguuggcGUUGCCaccgucgaAGCGGa- -3' miRNA: 3'- -UGAGCGGCu-GGCU-------------CAACGG--------UCGCCac -5' |
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31757 | 5' | -59 | NC_006938.1 | + | 20491 | 0.67 | 0.471732 |
Target: 5'- uGCU-GCUGAacgggCGAGUUGCCAGCGaUGu -3' miRNA: 3'- -UGAgCGGCUg----GCUCAACGGUCGCcAC- -5' |
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31757 | 5' | -59 | NC_006938.1 | + | 2022 | 0.67 | 0.471732 |
Target: 5'- -gUgGUCGGCgGuGUgaaGCCAGCGGUGu -3' miRNA: 3'- ugAgCGGCUGgCuCAa--CGGUCGCCAC- -5' |
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31757 | 5' | -59 | NC_006938.1 | + | 10699 | 0.67 | 0.462026 |
Target: 5'- cCUCGCC-ACCGAGc-GCCuGaCGGUGu -3' miRNA: 3'- uGAGCGGcUGGCUCaaCGGuC-GCCAC- -5' |
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31757 | 5' | -59 | NC_006938.1 | + | 25498 | 0.68 | 0.433559 |
Target: 5'- uCUUGCC-ACCGAcaGUggUGCCAGCGGc- -3' miRNA: 3'- uGAGCGGcUGGCU--CA--ACGGUCGCCac -5' |
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31757 | 5' | -59 | NC_006938.1 | + | 24005 | 0.73 | 0.206824 |
Target: 5'- -gUCGaCGGCCGAGaccgUGCgAGCGGUGg -3' miRNA: 3'- ugAGCgGCUGGCUCa---ACGgUCGCCAC- -5' |
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31757 | 5' | -59 | NC_006938.1 | + | 26441 | 1.07 | 0.000773 |
Target: 5'- cACUCGCCGACCGAGUUGCCAGCGGUGc -3' miRNA: 3'- -UGAGCGGCUGGCUCAACGGUCGCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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