miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31759 3' -55 NC_006938.1 + 14940 0.65 0.772925
Target:  5'- gGAGGugGCGCCAuu--UGUCaa-GGCg -3'
miRNA:   3'- -UUCCugCGCGGUcacuACAGcaaCCG- -5'
31759 3' -55 NC_006938.1 + 40888 0.66 0.762781
Target:  5'- gGAGGuaguuCGgGCaccgGGUGAUGUCGaccccUUGGCc -3'
miRNA:   3'- -UUCCu----GCgCGg---UCACUACAGC-----AACCG- -5'
31759 3' -55 NC_006938.1 + 47979 0.66 0.752503
Target:  5'- -cGuACGCuccCCAGaUGAUGUCGUUGGa -3'
miRNA:   3'- uuCcUGCGc--GGUC-ACUACAGCAACCg -5'
31759 3' -55 NC_006938.1 + 9757 0.66 0.749395
Target:  5'- cAGG--GUGCCAGUGGcUccaacggagcuucgGUCGUUGGCa -3'
miRNA:   3'- uUCCugCGCGGUCACU-A--------------CAGCAACCG- -5'
31759 3' -55 NC_006938.1 + 61643 0.66 0.73159
Target:  5'- uGGGucACGCaGCCGGUGGUGUaGUUGa- -3'
miRNA:   3'- uUCC--UGCG-CGGUCACUACAgCAACcg -5'
31759 3' -55 NC_006938.1 + 12489 0.67 0.699502
Target:  5'- --uGAUGacaGUCGG-GAUGUUGUUGGCg -3'
miRNA:   3'- uucCUGCg--CGGUCaCUACAGCAACCG- -5'
31759 3' -55 NC_006938.1 + 20501 0.67 0.666825
Target:  5'- -cGGGCGaguuGCCAGcGAUGUCcuugGGCa -3'
miRNA:   3'- uuCCUGCg---CGGUCaCUACAGcaa-CCG- -5'
31759 3' -55 NC_006938.1 + 50372 0.68 0.633853
Target:  5'- -cGGACGCGCCugucccacucccGGUGGUGcCGgguGCg -3'
miRNA:   3'- uuCCUGCGCGG------------UCACUACaGCaacCG- -5'
31759 3' -55 NC_006938.1 + 58563 0.69 0.578991
Target:  5'- -cGGACGCGCauCGGUGggGcgcUCGUggaUGGCc -3'
miRNA:   3'- uuCCUGCGCG--GUCACuaC---AGCA---ACCG- -5'
31759 3' -55 NC_006938.1 + 39049 0.69 0.578991
Target:  5'- cAGGACGaCGgcaCCGcUGGUGUCGcUGGCa -3'
miRNA:   3'- uUCCUGC-GC---GGUcACUACAGCaACCG- -5'
31759 3' -55 NC_006938.1 + 40117 0.7 0.48359
Target:  5'- -cGGACaGCGCCGGUcagccgGGUGUCGc-GGCc -3'
miRNA:   3'- uuCCUG-CGCGGUCA------CUACAGCaaCCG- -5'
31759 3' -55 NC_006938.1 + 52432 0.72 0.387342
Target:  5'- gGGGGACGgGCgGGUcGGUGUCG--GGCg -3'
miRNA:   3'- -UUCCUGCgCGgUCA-CUACAGCaaCCG- -5'
31759 3' -55 NC_006938.1 + 24773 1.1 0.000942
Target:  5'- gAAGGACGCGCCAGUGAUGUCGUUGGCg -3'
miRNA:   3'- -UUCCUGCGCGGUCACUACAGCAACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.