miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31759 5' -51.6 NC_006938.1 + 53894 0.66 0.913196
Target:  5'- -cGACAaCGUUGUCCaUGG-CGCggacgACCg -3'
miRNA:   3'- aaCUGUcGCAACAGGaACCaGUG-----UGG- -5'
31759 5' -51.6 NC_006938.1 + 54992 0.66 0.913196
Target:  5'- -gGAgGGCGU--UCCcUGGagGCACCa -3'
miRNA:   3'- aaCUgUCGCAacAGGaACCagUGUGG- -5'
31759 5' -51.6 NC_006938.1 + 29737 0.66 0.899608
Target:  5'- -cGACAGCGUcccucacgaUGUCCgggaccacGGcUCGCAgCCg -3'
miRNA:   3'- aaCUGUCGCA---------ACAGGaa------CC-AGUGU-GG- -5'
31759 5' -51.6 NC_006938.1 + 20357 0.67 0.877125
Target:  5'- -gGACAGCuGgccgGUCCgcgaGGaCACGCCg -3'
miRNA:   3'- aaCUGUCG-Caa--CAGGaa--CCaGUGUGG- -5'
31759 5' -51.6 NC_006938.1 + 55147 0.67 0.843469
Target:  5'- gUUGGCuuCGUUGUCCUcgGGaUACGCUg -3'
miRNA:   3'- -AACUGucGCAACAGGAa-CCaGUGUGG- -5'
31759 5' -51.6 NC_006938.1 + 54272 0.68 0.825208
Target:  5'- uUUGAC-GCGgcGUCUgUGGUCuACAUCg -3'
miRNA:   3'- -AACUGuCGCaaCAGGaACCAG-UGUGG- -5'
31759 5' -51.6 NC_006938.1 + 1258 0.68 0.825208
Target:  5'- gUGACAGCugUGUCCgu-GUC-CACCu -3'
miRNA:   3'- aACUGUCGcaACAGGaacCAGuGUGG- -5'
31759 5' -51.6 NC_006938.1 + 44073 0.69 0.765657
Target:  5'- uUUGACAGCGgugUGgCCggcauaGGUCuugACACCa -3'
miRNA:   3'- -AACUGUCGCa--ACaGGaa----CCAG---UGUGG- -5'
31759 5' -51.6 NC_006938.1 + 41429 0.69 0.744525
Target:  5'- gUGAuCGGCauccccUCCUUGGUCugACCg -3'
miRNA:   3'- aACU-GUCGcaac--AGGAACCAGugUGG- -5'
31759 5' -51.6 NC_006938.1 + 32033 0.7 0.711962
Target:  5'- cUGGCAG-GUUGUCCgUGGUCGucuCugCu -3'
miRNA:   3'- aACUGUCgCAACAGGaACCAGU---GugG- -5'
31759 5' -51.6 NC_006938.1 + 10043 0.7 0.711962
Target:  5'- cUGACGGCGgacaacgUGUCCUcUGG-CAUcgaGCCg -3'
miRNA:   3'- aACUGUCGCa------ACAGGA-ACCaGUG---UGG- -5'
31759 5' -51.6 NC_006938.1 + 13256 0.7 0.696492
Target:  5'- -gGACAGUGggagcacgaaggUGUCCUcuaccgagaccgGGUCAUACCg -3'
miRNA:   3'- aaCUGUCGCa-----------ACAGGAa-----------CCAGUGUGG- -5'
31759 5' -51.6 NC_006938.1 + 63407 0.7 0.68982
Target:  5'- -gGACGGCGagGUCCgcugGGaCugGCCg -3'
miRNA:   3'- aaCUGUCGCaaCAGGaa--CCaGugUGG- -5'
31759 5' -51.6 NC_006938.1 + 14895 0.74 0.469454
Target:  5'- gUGACgucAGCGUUGUuccggacggCCUUGGUCGCcuCCa -3'
miRNA:   3'- aACUG---UCGCAACA---------GGAACCAGUGu-GG- -5'
31759 5' -51.6 NC_006938.1 + 20508 0.75 0.419418
Target:  5'- gUUGcCAGCGaUGUCCUUGG--GCACCu -3'
miRNA:   3'- -AACuGUCGCaACAGGAACCagUGUGG- -5'
31759 5' -51.6 NC_006938.1 + 55487 0.77 0.321596
Target:  5'- aUGAUGGgGUUGUCCUUGGcCugGCg -3'
miRNA:   3'- aACUGUCgCAACAGGAACCaGugUGg -5'
31759 5' -51.6 NC_006938.1 + 24815 1.09 0.002456
Target:  5'- gUUGACAGCGUUGUCCUUGGUCACACCc -3'
miRNA:   3'- -AACUGUCGCAACAGGAACCAGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.