miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31760 3' -59.6 NC_006938.1 + 37218 0.66 0.541399
Target:  5'- cCAGUGGUggacgGCCGgaacCCUGCAUGGCa -3'
miRNA:   3'- -GUCGCCA-----CGGCagcaGGACGUGUCGc -5'
31760 3' -59.6 NC_006938.1 + 10534 0.66 0.541399
Target:  5'- -cGUGGUGCCaga---CUGCGCGGCGa -3'
miRNA:   3'- guCGCCACGGcagcagGACGUGUCGC- -5'
31760 3' -59.6 NC_006938.1 + 53410 0.66 0.529073
Target:  5'- aCAGCaGUGCCcucaccgagacCGaCCUGCGCGGUGg -3'
miRNA:   3'- -GUCGcCACGGca---------GCaGGACGUGUCGC- -5'
31760 3' -59.6 NC_006938.1 + 58944 0.66 0.510783
Target:  5'- aCGGUgGGUGCgGUCcuccgacugCCUGCGCAGUc -3'
miRNA:   3'- -GUCG-CCACGgCAGca-------GGACGUGUCGc -5'
31760 3' -59.6 NC_006938.1 + 18940 0.66 0.510783
Target:  5'- -cGUGGgacUGCCGUCG-CCUGCGaaaggaAGCu -3'
miRNA:   3'- guCGCC---ACGGCAGCaGGACGUg-----UCGc -5'
31760 3' -59.6 NC_006938.1 + 51950 0.66 0.500737
Target:  5'- uCGGCGGUGCCGccCGaUCUGC-C-GCGa -3'
miRNA:   3'- -GUCGCCACGGCa-GCaGGACGuGuCGC- -5'
31760 3' -59.6 NC_006938.1 + 239 0.66 0.490778
Target:  5'- uCGGCaGGUGCCGcgaguucaUCGUCUuggagGCACcGCGu -3'
miRNA:   3'- -GUCG-CCACGGC--------AGCAGGa----CGUGuCGC- -5'
31760 3' -59.6 NC_006938.1 + 52514 0.67 0.442465
Target:  5'- aGGCGGUGC--UCGcCCUGaaCACAGCu -3'
miRNA:   3'- gUCGCCACGgcAGCaGGAC--GUGUCGc -5'
31760 3' -59.6 NC_006938.1 + 17262 0.68 0.414799
Target:  5'- aGGCGGUcGCCaucaaCGUCCgccGCGCGGCc -3'
miRNA:   3'- gUCGCCA-CGGca---GCAGGa--CGUGUCGc -5'
31760 3' -59.6 NC_006938.1 + 12797 0.68 0.379613
Target:  5'- gAGCGGaGCuCGUCG-CC-GCGCAGUGc -3'
miRNA:   3'- gUCGCCaCG-GCAGCaGGaCGUGUCGC- -5'
31760 3' -59.6 NC_006938.1 + 25905 0.7 0.315476
Target:  5'- gAGCGGaaGCCcUCGUUCUGgGCGGCa -3'
miRNA:   3'- gUCGCCa-CGGcAGCAGGACgUGUCGc -5'
31760 3' -59.6 NC_006938.1 + 24519 1.09 0.00047
Target:  5'- cCAGCGGUGCCGUCGUCCUGCACAGCGg -3'
miRNA:   3'- -GUCGCCACGGCAGCAGGACGUGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.