miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31760 5' -52.1 NC_006938.1 + 18595 0.66 0.890049
Target:  5'- -gCGGCAUGCCcggcgCGUCcgaGGCGG-CGCa -3'
miRNA:   3'- aaGCCGUACGGua---GCAG---CUGUUaGUG- -5'
31760 5' -52.1 NC_006938.1 + 27172 0.66 0.87459
Target:  5'- -aUGGCGcGCCA-CGUCGagGCGGUCAa -3'
miRNA:   3'- aaGCCGUaCGGUaGCAGC--UGUUAGUg -5'
31760 5' -52.1 NC_006938.1 + 48237 0.66 0.87459
Target:  5'- -gUGGC--GCCAUCGUCaACGAguUCGCa -3'
miRNA:   3'- aaGCCGuaCGGUAGCAGcUGUU--AGUG- -5'
31760 5' -52.1 NC_006938.1 + 17510 0.66 0.858074
Target:  5'- -aUGGCuuUGCCAUCGaCGGCGGgccgaagCACu -3'
miRNA:   3'- aaGCCGu-ACGGUAGCaGCUGUUa------GUG- -5'
31760 5' -52.1 NC_006938.1 + 59370 0.66 0.849439
Target:  5'- -cUGGCAcGaCCAUCGUcggucCGACGGUCAg -3'
miRNA:   3'- aaGCCGUaC-GGUAGCA-----GCUGUUAGUg -5'
31760 5' -52.1 NC_006938.1 + 61191 0.67 0.840563
Target:  5'- cUCGGUggGCCAU-GUCGGCGAcgGCc -3'
miRNA:   3'- aAGCCGuaCGGUAgCAGCUGUUagUG- -5'
31760 5' -52.1 NC_006938.1 + 15304 0.67 0.837855
Target:  5'- gUCGGCcugagcgauguugaGUGCgAacUCGUUGACGAUgGCg -3'
miRNA:   3'- aAGCCG--------------UACGgU--AGCAGCUGUUAgUG- -5'
31760 5' -52.1 NC_006938.1 + 38995 0.67 0.831457
Target:  5'- cUCGGUgcggagGUgAUUGUCGACGAUgGCa -3'
miRNA:   3'- aAGCCGua----CGgUAGCAGCUGUUAgUG- -5'
31760 5' -52.1 NC_006938.1 + 51447 0.67 0.825886
Target:  5'- gUUGGCGUgggccugcgaGCCAggacgcuucggguucUCGUCGGCGGUgACg -3'
miRNA:   3'- aAGCCGUA----------CGGU---------------AGCAGCUGUUAgUG- -5'
31760 5' -52.1 NC_006938.1 + 55446 0.67 0.820238
Target:  5'- aUCGGCuuccucaucggGuCCGUCGUCGGCA--CACu -3'
miRNA:   3'- aAGCCGua---------C-GGUAGCAGCUGUuaGUG- -5'
31760 5' -52.1 NC_006938.1 + 46049 0.67 0.812591
Target:  5'- cUUCGGCccGCCGUCGaUGGCAAagcCAUa -3'
miRNA:   3'- -AAGCCGuaCGGUAGCaGCUGUUa--GUG- -5'
31760 5' -52.1 NC_006938.1 + 5864 0.67 0.802853
Target:  5'- --aGGuCGUGCCGUUGUCaagcguGACuGUCACa -3'
miRNA:   3'- aagCC-GUACGGUAGCAG------CUGuUAGUG- -5'
31760 5' -52.1 NC_006938.1 + 12392 0.68 0.796919
Target:  5'- -aUGGCA-GCCGUCagcgcgcggaacgCGACGAUCGCg -3'
miRNA:   3'- aaGCCGUaCGGUAGca-----------GCUGUUAGUG- -5'
31760 5' -52.1 NC_006938.1 + 36404 0.68 0.762136
Target:  5'- -gUGGCGcGCCAUCGUCuGAUGGaCGCa -3'
miRNA:   3'- aaGCCGUaCGGUAGCAG-CUGUUaGUG- -5'
31760 5' -52.1 NC_006938.1 + 41856 0.68 0.751574
Target:  5'- gUCgGGCuggaguUGCCGUCGcUC-ACAGUCACg -3'
miRNA:   3'- aAG-CCGu-----ACGGUAGC-AGcUGUUAGUG- -5'
31760 5' -52.1 NC_006938.1 + 24899 0.68 0.751574
Target:  5'- -gCGGC-UGCCAUCGgugUCGugA-UCGCg -3'
miRNA:   3'- aaGCCGuACGGUAGC---AGCugUuAGUG- -5'
31760 5' -52.1 NC_006938.1 + 50412 0.69 0.740885
Target:  5'- -cCGGCcUGCCAUCGUUc-CAGUUGCa -3'
miRNA:   3'- aaGCCGuACGGUAGCAGcuGUUAGUG- -5'
31760 5' -52.1 NC_006938.1 + 25012 0.69 0.73008
Target:  5'- aUUCGGCGUcgaGUCGUUGcCGAUCGCg -3'
miRNA:   3'- -AAGCCGUAcggUAGCAGCuGUUAGUG- -5'
31760 5' -52.1 NC_006938.1 + 57075 0.7 0.68595
Target:  5'- cUCGGCAuUGCCGUCuUCGuCGAgCACc -3'
miRNA:   3'- aAGCCGU-ACGGUAGcAGCuGUUaGUG- -5'
31760 5' -52.1 NC_006938.1 + 49478 0.7 0.674751
Target:  5'- gUCGGCc-GCCGUCGaCGACAccgucuUCGCg -3'
miRNA:   3'- aAGCCGuaCGGUAGCaGCUGUu-----AGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.