miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31761 3' -56.7 NC_006938.1 + 33672 0.66 0.705053
Target:  5'- aGGCggAGGGUGCuG-GAUCugGCUCCGCu -3'
miRNA:   3'- gCUG--UCCCACGuCuCUGG--UGAGGUGc -5'
31761 3' -56.7 NC_006938.1 + 19567 0.66 0.683864
Target:  5'- gGACGGGGagaugGUGGAGAUCaccgGCUUCugGa -3'
miRNA:   3'- gCUGUCCCa----CGUCUCUGG----UGAGGugC- -5'
31761 3' -56.7 NC_006938.1 + 25506 0.66 0.662485
Target:  5'- cCGACAGuGGUGcCAGcGGCCuuggccauccGCUCgGCGu -3'
miRNA:   3'- -GCUGUC-CCAC-GUCuCUGG----------UGAGgUGC- -5'
31761 3' -56.7 NC_006938.1 + 7629 0.66 0.659267
Target:  5'- gCGGCAGGucgucgaacacgauGUaGCAGAGGCCACggugUCCGgGc -3'
miRNA:   3'- -GCUGUCC--------------CA-CGUCUCUGGUG----AGGUgC- -5'
31761 3' -56.7 NC_006938.1 + 26920 0.67 0.607659
Target:  5'- -cACAGGGcggcaacUGguGGGAUCucCUCCACGg -3'
miRNA:   3'- gcUGUCCC-------ACguCUCUGGu-GAGGUGC- -5'
31761 3' -56.7 NC_006938.1 + 11578 0.67 0.598004
Target:  5'- gCGGCAGGuG-GCGGAGGCCuuugGCUuCCGuCGg -3'
miRNA:   3'- -GCUGUCC-CaCGUCUCUGG----UGA-GGU-GC- -5'
31761 3' -56.7 NC_006938.1 + 20867 0.68 0.587304
Target:  5'- uCGACAGuGGUGUc--GACCcCUCCACc -3'
miRNA:   3'- -GCUGUC-CCACGucuCUGGuGAGGUGc -5'
31761 3' -56.7 NC_006938.1 + 26110 0.68 0.586236
Target:  5'- cCGACAGaccugauGGUGCauguGGcAGGCCACgggCCGCGc -3'
miRNA:   3'- -GCUGUC-------CCACG----UC-UCUGGUGa--GGUGC- -5'
31761 3' -56.7 NC_006938.1 + 48352 0.68 0.549134
Target:  5'- gGGCGGcGGUGacgagcgcguccuguCGGAGACCGucggcacuguCUCCACGa -3'
miRNA:   3'- gCUGUC-CCAC---------------GUCUCUGGU----------GAGGUGC- -5'
31761 3' -56.7 NC_006938.1 + 50371 0.7 0.463695
Target:  5'- uCGGCAcGGGaGCGGAGGCCACcgcucgUCGCa -3'
miRNA:   3'- -GCUGU-CCCaCGUCUCUGGUGa-----GGUGc -5'
31761 3' -56.7 NC_006938.1 + 23197 0.72 0.355071
Target:  5'- cCGACccuggAGGaGUGCAGGGACCAgUUCgACGa -3'
miRNA:   3'- -GCUG-----UCC-CACGUCUCUGGU-GAGgUGC- -5'
31761 3' -56.7 NC_006938.1 + 15780 0.73 0.323068
Target:  5'- uGGCcGGuGUGuCAGAGcCCACUCCGCu -3'
miRNA:   3'- gCUGuCC-CAC-GUCUCuGGUGAGGUGc -5'
31761 3' -56.7 NC_006938.1 + 24354 1.08 0.001059
Target:  5'- cCGACAGGGUGCAGAGACCACUCCACGc -3'
miRNA:   3'- -GCUGUCCCACGUCUCUGGUGAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.