miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31761 5' -55.5 NC_006938.1 + 261 0.66 0.749324
Target:  5'- cGUCUUGGAGgCACCGCg--UGCCaccagcUGCu -3'
miRNA:   3'- -CAGAGUCUUgGUGGCGgcaACGG------ACG- -5'
31761 5' -55.5 NC_006938.1 + 29755 0.66 0.738963
Target:  5'- uGUC-CGGGACCACgGCuCGcaGCCgauagGCg -3'
miRNA:   3'- -CAGaGUCUUGGUGgCG-GCaaCGGa----CG- -5'
31761 5' -55.5 NC_006938.1 + 36005 0.66 0.734788
Target:  5'- cGUCUCAccauccccugcaucGAGCCACCGCgaacgggcgggugCGUgGCCccGCa -3'
miRNA:   3'- -CAGAGU--------------CUUGGUGGCG-------------GCAaCGGa-CG- -5'
31761 5' -55.5 NC_006938.1 + 55927 0.66 0.728495
Target:  5'- uUCUCgcugAGGACCuggGCCGCC-UUGCCaGUg -3'
miRNA:   3'- cAGAG----UCUUGG---UGGCGGcAACGGaCG- -5'
31761 5' -55.5 NC_006938.1 + 9167 0.66 0.717933
Target:  5'- cGUCgcCAGcucuGGCCACCGCCGUgGCgC-GCa -3'
miRNA:   3'- -CAGa-GUC----UUGGUGGCGGCAaCG-GaCG- -5'
31761 5' -55.5 NC_006938.1 + 3193 0.66 0.707287
Target:  5'- gGUC-CAGcuGGCCACUGagacgaacUgGUUGCCUGCa -3'
miRNA:   3'- -CAGaGUC--UUGGUGGC--------GgCAACGGACG- -5'
31761 5' -55.5 NC_006938.1 + 24548 0.67 0.696568
Target:  5'- ---aCAGGuCCGCCGCCGc-GCgCUGCc -3'
miRNA:   3'- cagaGUCUuGGUGGCGGCaaCG-GACG- -5'
31761 5' -55.5 NC_006938.1 + 45051 0.67 0.685788
Target:  5'- ---cCAGAgGCCACCGUCGUccgGCCgGUa -3'
miRNA:   3'- cagaGUCU-UGGUGGCGGCAa--CGGaCG- -5'
31761 5' -55.5 NC_006938.1 + 18759 0.67 0.685788
Target:  5'- -cCUgAGggUUACCcguuGCCGUaucuuuggugaUGCCUGCa -3'
miRNA:   3'- caGAgUCuuGGUGG----CGGCA-----------ACGGACG- -5'
31761 5' -55.5 NC_006938.1 + 2077 0.67 0.664087
Target:  5'- aGUCgUCgAGAuauccgccgagACCGuuGCCGUUGCC-GCu -3'
miRNA:   3'- -CAG-AG-UCU-----------UGGUggCGGCAACGGaCG- -5'
31761 5' -55.5 NC_006938.1 + 15398 0.67 0.653187
Target:  5'- cUCUCcuGGGcaguCCACCGucuCCGUcGCCUGCc -3'
miRNA:   3'- cAGAG--UCUu---GGUGGC---GGCAaCGGACG- -5'
31761 5' -55.5 NC_006938.1 + 11956 0.67 0.653187
Target:  5'- uUCUCuGAccguGCCACCGCCucaGCC-GCg -3'
miRNA:   3'- cAGAGuCU----UGGUGGCGGcaaCGGaCG- -5'
31761 5' -55.5 NC_006938.1 + 29161 0.67 0.642267
Target:  5'- -cCUCGGccgagucauauGCCACCGCUG--GCCUGUg -3'
miRNA:   3'- caGAGUCu----------UGGUGGCGGCaaCGGACG- -5'
31761 5' -55.5 NC_006938.1 + 37516 0.68 0.631339
Target:  5'- -gCUCGaGGCCGCCGCCGcugGCaaGCu -3'
miRNA:   3'- caGAGUcUUGGUGGCGGCaa-CGgaCG- -5'
31761 5' -55.5 NC_006938.1 + 26482 0.68 0.620411
Target:  5'- cUCUCGGAGggucucaCGCUGCCGggGCCUc- -3'
miRNA:   3'- cAGAGUCUUg------GUGGCGGCaaCGGAcg -5'
31761 5' -55.5 NC_006938.1 + 51033 0.69 0.576892
Target:  5'- ---cCGGGGCCuCCGCCGcguUUGCCaGCg -3'
miRNA:   3'- cagaGUCUUGGuGGCGGC---AACGGaCG- -5'
31761 5' -55.5 NC_006938.1 + 42719 0.7 0.48228
Target:  5'- gGUCUCGG-GCCACCucgcGCUGUgucuUGCCcGCg -3'
miRNA:   3'- -CAGAGUCuUGGUGG----CGGCA----ACGGaCG- -5'
31761 5' -55.5 NC_006938.1 + 26715 0.71 0.423531
Target:  5'- aUgUCAGA--CAUCGCCGUggcgauUGCCUGCa -3'
miRNA:   3'- cAgAGUCUugGUGGCGGCA------ACGGACG- -5'
31761 5' -55.5 NC_006938.1 + 20311 0.74 0.312267
Target:  5'- cGUCUgCAGGGCCACCguGCUGUUcGCC-GCg -3'
miRNA:   3'- -CAGA-GUCUUGGUGG--CGGCAA-CGGaCG- -5'
31761 5' -55.5 NC_006938.1 + 3949 0.85 0.052676
Target:  5'- uGUCUCGGAgcacgauGCCACCGCCGUugaaggUGCUUGCc -3'
miRNA:   3'- -CAGAGUCU-------UGGUGGCGGCA------ACGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.