Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31762 | 3' | -59.8 | NC_006938.1 | + | 16980 | 0.66 | 0.553687 |
|
Target: 5'- gGCagCUGGGGAGCGC--GGGGccgugucgCCUCu -3' miRNA: 3'- -CGa-GGCCCCUCGCGuaCUCCa-------GGAGc -5' |
|||||||
| 31762 | 3' | -59.8 | NC_006938.1 | + | 9174 | 0.67 | 0.493128 |
|
Target: 5'- aGCUCUGGccaccgccguGGcGCGCAgaUGGGcGUCCUCc -3' miRNA: 3'- -CGAGGCC----------CCuCGCGU--ACUC-CAGGAGc -5' |
|||||||
| 31762 | 3' | -59.8 | NC_006938.1 | + | 17405 | 0.67 | 0.493128 |
|
Target: 5'- cCUCCuggaaGGGAGCGCG-GAGGguggCCUuCGa -3' miRNA: 3'- cGAGGc----CCCUCGCGUaCUCCa---GGA-GC- -5' |
|||||||
| 31762 | 3' | -59.8 | NC_006938.1 | + | 45637 | 0.68 | 0.399771 |
|
Target: 5'- aGCUCCaggauccucaGGGGcagGGCGCA-GucGUCCUCGc -3' miRNA: 3'- -CGAGG----------CCCC---UCGCGUaCucCAGGAGC- -5' |
|||||||
| 31762 | 3' | -59.8 | NC_006938.1 | + | 58061 | 0.7 | 0.303806 |
|
Target: 5'- aGCggCGGGuGGCGCGuccUGGuGGUCCUCGg -3' miRNA: 3'- -CGagGCCCcUCGCGU---ACU-CCAGGAGC- -5' |
|||||||
| 31762 | 3' | -59.8 | NC_006938.1 | + | 41048 | 0.71 | 0.268726 |
|
Target: 5'- cGCgUCUcGGGAGCGCAcucgccuccuccgUGgccGGGUCCUCGa -3' miRNA: 3'- -CG-AGGcCCCUCGCGU-------------AC---UCCAGGAGC- -5' |
|||||||
| 31762 | 3' | -59.8 | NC_006938.1 | + | 2455 | 0.75 | 0.150027 |
|
Target: 5'- cGCUCuCGGGGAagaGCGUGGGGacagCCUCGu -3' miRNA: 3'- -CGAG-GCCCCUcg-CGUACUCCa---GGAGC- -5' |
|||||||
| 31762 | 3' | -59.8 | NC_006938.1 | + | 22965 | 1.11 | 0.000367 |
|
Target: 5'- aGCUCCGGGGAGCGCAUGAGGUCCUCGa -3' miRNA: 3'- -CGAGGCCCCUCGCGUACUCCAGGAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home