miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31764 3' -60.1 NC_006938.1 + 39176 0.66 0.528657
Target:  5'- aCGGCgGUGguucUGagaCCCUGCaCUCCCGCg -3'
miRNA:   3'- -GCUGgCGCau--ACa--GGGGCG-GAGGGUG- -5'
31764 3' -60.1 NC_006938.1 + 22722 0.66 0.49864
Target:  5'- gCGAUUGgGUG-GUCCCgGCCggUCCCGa -3'
miRNA:   3'- -GCUGGCgCAUaCAGGGgCGG--AGGGUg -5'
31764 3' -60.1 NC_006938.1 + 28817 0.66 0.484893
Target:  5'- gGGCCGCGacgcgcacggucaGUG-CCUCGCCugacUCCCGCu -3'
miRNA:   3'- gCUGGCGCa------------UACaGGGGCGG----AGGGUG- -5'
31764 3' -60.1 NC_006938.1 + 22380 0.67 0.479057
Target:  5'- gGGCCGCGcgacugGUGcagaaCCCCGCgaCCCAg -3'
miRNA:   3'- gCUGGCGCa-----UACa----GGGGCGgaGGGUg -5'
31764 3' -60.1 NC_006938.1 + 62155 0.67 0.450413
Target:  5'- gCGACCG-GcGUGUCUCCGaUC-CCCGCg -3'
miRNA:   3'- -GCUGGCgCaUACAGGGGC-GGaGGGUG- -5'
31764 3' -60.1 NC_006938.1 + 49336 0.67 0.431849
Target:  5'- cCGGCCGCcUGUGUCUuuGUCugUCCCu- -3'
miRNA:   3'- -GCUGGCGcAUACAGGggCGG--AGGGug -5'
31764 3' -60.1 NC_006938.1 + 43807 0.68 0.41374
Target:  5'- uGGCC-CGguUGUCCagCGCCUUCCGCa -3'
miRNA:   3'- gCUGGcGCauACAGGg-GCGGAGGGUG- -5'
31764 3' -60.1 NC_006938.1 + 56006 0.68 0.41374
Target:  5'- uGGCCaGCGUG-GUCuugCCCGUC-CCCGCg -3'
miRNA:   3'- gCUGG-CGCAUaCAG---GGGCGGaGGGUG- -5'
31764 3' -60.1 NC_006938.1 + 26530 0.68 0.404863
Target:  5'- gGGCCGgGUcAUGUCCCgcgCGCCggUCCgGCu -3'
miRNA:   3'- gCUGGCgCA-UACAGGG---GCGG--AGGgUG- -5'
31764 3' -60.1 NC_006938.1 + 30793 0.69 0.354201
Target:  5'- cCGA-CGCGUggGcUCCguCCGCCUCCUGCg -3'
miRNA:   3'- -GCUgGCGCAuaC-AGG--GGCGGAGGGUG- -5'
31764 3' -60.1 NC_006938.1 + 47604 0.7 0.30097
Target:  5'- uCGACCGCGUcgGcguaucgggCCUCGCC-CCUGCc -3'
miRNA:   3'- -GCUGGCGCAuaCa--------GGGGCGGaGGGUG- -5'
31764 3' -60.1 NC_006938.1 + 2788 0.71 0.247949
Target:  5'- uGGCCGCGU-UGUCuCCUGCCagaaaguagcacUCCCAg -3'
miRNA:   3'- gCUGGCGCAuACAG-GGGCGG------------AGGGUg -5'
31764 3' -60.1 NC_006938.1 + 50013 0.72 0.241893
Target:  5'- gGAUCGCccGUGUGgguggCCCCGCCUCUggaaCGCg -3'
miRNA:   3'- gCUGGCG--CAUACa----GGGGCGGAGG----GUG- -5'
31764 3' -60.1 NC_006938.1 + 20113 0.72 0.224464
Target:  5'- -cGCCGCGUG-GUCUCCuggGCCUCCgACa -3'
miRNA:   3'- gcUGGCGCAUaCAGGGG---CGGAGGgUG- -5'
31764 3' -60.1 NC_006938.1 + 8244 0.72 0.218896
Target:  5'- gCGACCGaCGacUGaCUCgGCCUCCCACa -3'
miRNA:   3'- -GCUGGC-GCauACaGGGgCGGAGGGUG- -5'
31764 3' -60.1 NC_006938.1 + 20129 1.1 0.000401
Target:  5'- cCGACCGCGUAUGUCCCCGCCUCCCACg -3'
miRNA:   3'- -GCUGGCGCAUACAGGGGCGGAGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.