Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31764 | 3' | -60.1 | NC_006938.1 | + | 20129 | 1.1 | 0.000401 |
Target: 5'- cCGACCGCGUAUGUCCCCGCCUCCCACg -3' miRNA: 3'- -GCUGGCGCAUACAGGGGCGGAGGGUG- -5' |
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31764 | 3' | -60.1 | NC_006938.1 | + | 8244 | 0.72 | 0.218896 |
Target: 5'- gCGACCGaCGacUGaCUCgGCCUCCCACa -3' miRNA: 3'- -GCUGGC-GCauACaGGGgCGGAGGGUG- -5' |
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31764 | 3' | -60.1 | NC_006938.1 | + | 2788 | 0.71 | 0.247949 |
Target: 5'- uGGCCGCGU-UGUCuCCUGCCagaaaguagcacUCCCAg -3' miRNA: 3'- gCUGGCGCAuACAG-GGGCGG------------AGGGUg -5' |
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31764 | 3' | -60.1 | NC_006938.1 | + | 47604 | 0.7 | 0.30097 |
Target: 5'- uCGACCGCGUcgGcguaucgggCCUCGCC-CCUGCc -3' miRNA: 3'- -GCUGGCGCAuaCa--------GGGGCGGaGGGUG- -5' |
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31764 | 3' | -60.1 | NC_006938.1 | + | 26530 | 0.68 | 0.404863 |
Target: 5'- gGGCCGgGUcAUGUCCCgcgCGCCggUCCgGCu -3' miRNA: 3'- gCUGGCgCA-UACAGGG---GCGG--AGGgUG- -5' |
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31764 | 3' | -60.1 | NC_006938.1 | + | 56006 | 0.68 | 0.41374 |
Target: 5'- uGGCCaGCGUG-GUCuugCCCGUC-CCCGCg -3' miRNA: 3'- gCUGG-CGCAUaCAG---GGGCGGaGGGUG- -5' |
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31764 | 3' | -60.1 | NC_006938.1 | + | 43807 | 0.68 | 0.41374 |
Target: 5'- uGGCC-CGguUGUCCagCGCCUUCCGCa -3' miRNA: 3'- gCUGGcGCauACAGGg-GCGGAGGGUG- -5' |
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31764 | 3' | -60.1 | NC_006938.1 | + | 49336 | 0.67 | 0.431849 |
Target: 5'- cCGGCCGCcUGUGUCUuuGUCugUCCCu- -3' miRNA: 3'- -GCUGGCGcAUACAGGggCGG--AGGGug -5' |
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31764 | 3' | -60.1 | NC_006938.1 | + | 62155 | 0.67 | 0.450413 |
Target: 5'- gCGACCG-GcGUGUCUCCGaUC-CCCGCg -3' miRNA: 3'- -GCUGGCgCaUACAGGGGC-GGaGGGUG- -5' |
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31764 | 3' | -60.1 | NC_006938.1 | + | 28817 | 0.66 | 0.484893 |
Target: 5'- gGGCCGCGacgcgcacggucaGUG-CCUCGCCugacUCCCGCu -3' miRNA: 3'- gCUGGCGCa------------UACaGGGGCGG----AGGGUG- -5' |
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31764 | 3' | -60.1 | NC_006938.1 | + | 39176 | 0.66 | 0.528657 |
Target: 5'- aCGGCgGUGguucUGagaCCCUGCaCUCCCGCg -3' miRNA: 3'- -GCUGgCGCau--ACa--GGGGCG-GAGGGUG- -5' |
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31764 | 3' | -60.1 | NC_006938.1 | + | 22722 | 0.66 | 0.49864 |
Target: 5'- gCGAUUGgGUG-GUCCCgGCCggUCCCGa -3' miRNA: 3'- -GCUGGCgCAUaCAGGGgCGG--AGGGUg -5' |
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31764 | 3' | -60.1 | NC_006938.1 | + | 22380 | 0.67 | 0.479057 |
Target: 5'- gGGCCGCGcgacugGUGcagaaCCCCGCgaCCCAg -3' miRNA: 3'- gCUGGCGCa-----UACa----GGGGCGgaGGGUg -5' |
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31764 | 3' | -60.1 | NC_006938.1 | + | 30793 | 0.69 | 0.354201 |
Target: 5'- cCGA-CGCGUggGcUCCguCCGCCUCCUGCg -3' miRNA: 3'- -GCUgGCGCAuaC-AGG--GGCGGAGGGUG- -5' |
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31764 | 3' | -60.1 | NC_006938.1 | + | 50013 | 0.72 | 0.241893 |
Target: 5'- gGAUCGCccGUGUGgguggCCCCGCCUCUggaaCGCg -3' miRNA: 3'- gCUGGCG--CAUACa----GGGGCGGAGG----GUG- -5' |
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31764 | 3' | -60.1 | NC_006938.1 | + | 20113 | 0.72 | 0.224464 |
Target: 5'- -cGCCGCGUG-GUCUCCuggGCCUCCgACa -3' miRNA: 3'- gcUGGCGCAUaCAGGGG---CGGAGGgUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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