miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31764 5' -50.9 NC_006938.1 + 30274 0.66 0.946585
Target:  5'- uCUGCUccggAGAGAUGAUgaUAUgGgGAAUGAa -3'
miRNA:   3'- -GACGG----UCUCUGCUA--GUAgCgCUUACU- -5'
31764 5' -50.9 NC_006938.1 + 24183 0.66 0.941665
Target:  5'- -aGCCcGAGAgcucccCGAUCcgcuuaggcuUCGCGAGUGAu -3'
miRNA:   3'- gaCGGuCUCU------GCUAGu---------AGCGCUUACU- -5'
31764 5' -50.9 NC_006938.1 + 12337 0.66 0.941665
Target:  5'- -cGCC-GAGAUGGcCGUCGC-AAUGAc -3'
miRNA:   3'- gaCGGuCUCUGCUaGUAGCGcUUACU- -5'
31764 5' -50.9 NC_006938.1 + 29490 0.66 0.93646
Target:  5'- gCUGCCAGGcGCGcaggcCGUCGUGAGgagGAa -3'
miRNA:   3'- -GACGGUCUcUGCua---GUAGCGCUUa--CU- -5'
31764 5' -50.9 NC_006938.1 + 37482 0.66 0.930968
Target:  5'- uUGCCGGGGACuccUCcgCGCGAc--- -3'
miRNA:   3'- gACGGUCUCUGcu-AGuaGCGCUuacu -5'
31764 5' -50.9 NC_006938.1 + 24566 0.66 0.925189
Target:  5'- gCUGCCAGAGGCcauGcgCGcUCGCGGc--- -3'
miRNA:   3'- -GACGGUCUCUG---CuaGU-AGCGCUuacu -5'
31764 5' -50.9 NC_006938.1 + 46515 0.66 0.921583
Target:  5'- -gGCCGGAguguGACGuUCGUucagcuggacacgacCGCGAGUGAc -3'
miRNA:   3'- gaCGGUCU----CUGCuAGUA---------------GCGCUUACU- -5'
31764 5' -50.9 NC_006938.1 + 25148 0.66 0.919121
Target:  5'- gCUGgCuGAGAUGGUCGUuCGCGAc--- -3'
miRNA:   3'- -GACgGuCUCUGCUAGUA-GCGCUuacu -5'
31764 5' -50.9 NC_006938.1 + 42484 0.67 0.912767
Target:  5'- -gGCCGGaAGGUGGUCGUCGUGAu--- -3'
miRNA:   3'- gaCGGUC-UCUGCUAGUAGCGCUuacu -5'
31764 5' -50.9 NC_006938.1 + 9348 0.67 0.907477
Target:  5'- cCUGCgucccgucgacgaAGAGGCGGagguuguugcuggCGUCGCGAGUGAc -3'
miRNA:   3'- -GACGg------------UCUCUGCUa------------GUAGCGCUUACU- -5'
31764 5' -50.9 NC_006938.1 + 32646 0.67 0.906126
Target:  5'- gCUGCCAGccaaGGACGGcaUCAUC-CGGAgGAa -3'
miRNA:   3'- -GACGGUC----UCUGCU--AGUAGcGCUUaCU- -5'
31764 5' -50.9 NC_006938.1 + 20578 0.67 0.899203
Target:  5'- -cGCCAGGucGuCGAUCGUCGUGccauUGAa -3'
miRNA:   3'- gaCGGUCU--CuGCUAGUAGCGCuu--ACU- -5'
31764 5' -50.9 NC_006938.1 + 12615 0.69 0.825045
Target:  5'- -gGCCGaucgucGGGACGGUCGUgGCGAAg-- -3'
miRNA:   3'- gaCGGU------CUCUGCUAGUAgCGCUUacu -5'
31764 5' -50.9 NC_006938.1 + 45085 0.69 0.815627
Target:  5'- -cGCCAGAucggGGCGAuguccUCGUCGCGGGa-- -3'
miRNA:   3'- gaCGGUCU----CUGCU-----AGUAGCGCUUacu -5'
31764 5' -50.9 NC_006938.1 + 56222 0.7 0.77606
Target:  5'- -aGCCAG-GACGGUCucUCGUccgGGAUGAa -3'
miRNA:   3'- gaCGGUCuCUGCUAGu-AGCG---CUUACU- -5'
31764 5' -50.9 NC_006938.1 + 59213 0.71 0.723206
Target:  5'- uCUGCUGGAGGCGGUUcUgGCGGcgGUGGg -3'
miRNA:   3'- -GACGGUCUCUGCUAGuAgCGCU--UACU- -5'
31764 5' -50.9 NC_006938.1 + 51487 0.71 0.712303
Target:  5'- -aGCCGgggcagucGAGGCGAUCGUCGcCGcGUGGa -3'
miRNA:   3'- gaCGGU--------CUCUGCUAGUAGC-GCuUACU- -5'
31764 5' -50.9 NC_006938.1 + 22433 0.73 0.611887
Target:  5'- -aGCCAGcggGGAUGGUCGUUGCG-AUGGc -3'
miRNA:   3'- gaCGGUC---UCUGCUAGUAGCGCuUACU- -5'
31764 5' -50.9 NC_006938.1 + 19554 0.74 0.567265
Target:  5'- -gGCCAGAccGAUGAaCAUCGCGGAgcgGAg -3'
miRNA:   3'- gaCGGUCU--CUGCUaGUAGCGCUUa--CU- -5'
31764 5' -50.9 NC_006938.1 + 20163 1.1 0.002855
Target:  5'- cCUGCCAGAGACGAUCAUCGCGAAUGAa -3'
miRNA:   3'- -GACGGUCUCUGCUAGUAGCGCUUACU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.