Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31764 | 5' | -50.9 | NC_006938.1 | + | 59213 | 0.71 | 0.723206 |
Target: 5'- uCUGCUGGAGGCGGUUcUgGCGGcgGUGGg -3' miRNA: 3'- -GACGGUCUCUGCUAGuAgCGCU--UACU- -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 56222 | 0.7 | 0.77606 |
Target: 5'- -aGCCAG-GACGGUCucUCGUccgGGAUGAa -3' miRNA: 3'- gaCGGUCuCUGCUAGu-AGCG---CUUACU- -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 51487 | 0.71 | 0.712303 |
Target: 5'- -aGCCGgggcagucGAGGCGAUCGUCGcCGcGUGGa -3' miRNA: 3'- gaCGGU--------CUCUGCUAGUAGC-GCuUACU- -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 46515 | 0.66 | 0.921583 |
Target: 5'- -gGCCGGAguguGACGuUCGUucagcuggacacgacCGCGAGUGAc -3' miRNA: 3'- gaCGGUCU----CUGCuAGUA---------------GCGCUUACU- -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 45085 | 0.69 | 0.815627 |
Target: 5'- -cGCCAGAucggGGCGAuguccUCGUCGCGGGa-- -3' miRNA: 3'- gaCGGUCU----CUGCU-----AGUAGCGCUUacu -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 42484 | 0.67 | 0.912767 |
Target: 5'- -gGCCGGaAGGUGGUCGUCGUGAu--- -3' miRNA: 3'- gaCGGUC-UCUGCUAGUAGCGCUuacu -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 37482 | 0.66 | 0.930968 |
Target: 5'- uUGCCGGGGACuccUCcgCGCGAc--- -3' miRNA: 3'- gACGGUCUCUGcu-AGuaGCGCUuacu -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 32646 | 0.67 | 0.906126 |
Target: 5'- gCUGCCAGccaaGGACGGcaUCAUC-CGGAgGAa -3' miRNA: 3'- -GACGGUC----UCUGCU--AGUAGcGCUUaCU- -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 30274 | 0.66 | 0.946585 |
Target: 5'- uCUGCUccggAGAGAUGAUgaUAUgGgGAAUGAa -3' miRNA: 3'- -GACGG----UCUCUGCUA--GUAgCgCUUACU- -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 29490 | 0.66 | 0.93646 |
Target: 5'- gCUGCCAGGcGCGcaggcCGUCGUGAGgagGAa -3' miRNA: 3'- -GACGGUCUcUGCua---GUAGCGCUUa--CU- -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 25148 | 0.66 | 0.919121 |
Target: 5'- gCUGgCuGAGAUGGUCGUuCGCGAc--- -3' miRNA: 3'- -GACgGuCUCUGCUAGUA-GCGCUuacu -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 24566 | 0.66 | 0.925189 |
Target: 5'- gCUGCCAGAGGCcauGcgCGcUCGCGGc--- -3' miRNA: 3'- -GACGGUCUCUG---CuaGU-AGCGCUuacu -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 24183 | 0.66 | 0.941665 |
Target: 5'- -aGCCcGAGAgcucccCGAUCcgcuuaggcuUCGCGAGUGAu -3' miRNA: 3'- gaCGGuCUCU------GCUAGu---------AGCGCUUACU- -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 22433 | 0.73 | 0.611887 |
Target: 5'- -aGCCAGcggGGAUGGUCGUUGCG-AUGGc -3' miRNA: 3'- gaCGGUC---UCUGCUAGUAGCGCuUACU- -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 20578 | 0.67 | 0.899203 |
Target: 5'- -cGCCAGGucGuCGAUCGUCGUGccauUGAa -3' miRNA: 3'- gaCGGUCU--CuGCUAGUAGCGCuu--ACU- -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 20163 | 1.1 | 0.002855 |
Target: 5'- cCUGCCAGAGACGAUCAUCGCGAAUGAa -3' miRNA: 3'- -GACGGUCUCUGCUAGUAGCGCUUACU- -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 19554 | 0.74 | 0.567265 |
Target: 5'- -gGCCAGAccGAUGAaCAUCGCGGAgcgGAg -3' miRNA: 3'- gaCGGUCU--CUGCUaGUAGCGCUUa--CU- -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 12615 | 0.69 | 0.825045 |
Target: 5'- -gGCCGaucgucGGGACGGUCGUgGCGAAg-- -3' miRNA: 3'- gaCGGU------CUCUGCUAGUAgCGCUUacu -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 12337 | 0.66 | 0.941665 |
Target: 5'- -cGCC-GAGAUGGcCGUCGC-AAUGAc -3' miRNA: 3'- gaCGGuCUCUGCUaGUAGCGcUUACU- -5' |
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31764 | 5' | -50.9 | NC_006938.1 | + | 9348 | 0.67 | 0.907477 |
Target: 5'- cCUGCgucccgucgacgaAGAGGCGGagguuguugcuggCGUCGCGAGUGAc -3' miRNA: 3'- -GACGg------------UCUCUGCUa------------GUAGCGCUUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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