miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31765 3' -50 NC_006938.1 + 31791 0.66 0.971371
Target:  5'- gCGUGC-CGAAGUCGuCGuCgUGGACc -3'
miRNA:   3'- gGCAUGaGCUUCGGCuGCuGaACUUG- -5'
31765 3' -50 NC_006938.1 + 39374 0.66 0.971371
Target:  5'- gUCGUACUCGguGuuGAgGAC--GGGCa -3'
miRNA:   3'- -GGCAUGAGCuuCggCUgCUGaaCUUG- -5'
31765 3' -50 NC_006938.1 + 18198 0.66 0.968164
Target:  5'- gCCGgacaccaGCU-GAAcGCCGAUGACgcugUGGACa -3'
miRNA:   3'- -GGCa------UGAgCUU-CGGCUGCUGa---ACUUG- -5'
31765 3' -50 NC_006938.1 + 21159 0.66 0.964709
Target:  5'- gCGUcggcgaagaACUCGAcGCCGaggaagcaguGCGGCUUGAcagGCg -3'
miRNA:   3'- gGCA---------UGAGCUuCGGC----------UGCUGAACU---UG- -5'
31765 3' -50 NC_006938.1 + 42225 0.67 0.952793
Target:  5'- cCCGuUGC-CGGAGUCGAUGAUgagaguggGAGCc -3'
miRNA:   3'- -GGC-AUGaGCUUCGGCUGCUGaa------CUUG- -5'
31765 3' -50 NC_006938.1 + 50898 0.67 0.952793
Target:  5'- gCGUGCUcaacgccuuccgCGAggcGGCCGAgGGCcUGGACc -3'
miRNA:   3'- gGCAUGA------------GCU---UCGGCUgCUGaACUUG- -5'
31765 3' -50 NC_006938.1 + 34586 0.67 0.948283
Target:  5'- cCCG-GCUCGAccuGCCGACgGACgccGACg -3'
miRNA:   3'- -GGCaUGAGCUu--CGGCUG-CUGaacUUG- -5'
31765 3' -50 NC_006938.1 + 39705 0.68 0.933083
Target:  5'- aCUGUGcCUCGucGCCGuucuCGugUuUGAACa -3'
miRNA:   3'- -GGCAU-GAGCuuCGGCu---GCugA-ACUUG- -5'
31765 3' -50 NC_006938.1 + 17313 0.68 0.921534
Target:  5'- gCGUACUCc--GCCGugGccuGCUUGAGg -3'
miRNA:   3'- gGCAUGAGcuuCGGCugC---UGAACUUg -5'
31765 3' -50 NC_006938.1 + 32697 0.69 0.895048
Target:  5'- aUGUGCUCGggGUCGuCGGCg----- -3'
miRNA:   3'- gGCAUGAGCuuCGGCuGCUGaacuug -5'
31765 3' -50 NC_006938.1 + 12838 0.69 0.895048
Target:  5'- --aUGCUCGAGaacGCCGACGACaucgaccugUGGGCc -3'
miRNA:   3'- ggcAUGAGCUU---CGGCUGCUGa--------ACUUG- -5'
31765 3' -50 NC_006938.1 + 15690 0.69 0.887734
Target:  5'- aCGUGgUCGGgucGGCCGugguCGACUgcaGGACg -3'
miRNA:   3'- gGCAUgAGCU---UCGGCu---GCUGAa--CUUG- -5'
31765 3' -50 NC_006938.1 + 53333 0.7 0.864209
Target:  5'- aCCGcGCUguccaCGAAGCCcugGGCGACUgugaGAACg -3'
miRNA:   3'- -GGCaUGA-----GCUUCGG---CUGCUGAa---CUUG- -5'
31765 3' -50 NC_006938.1 + 45653 0.7 0.855861
Target:  5'- aCCGa--UCGAGGCCGggaggccgagaACGGCUgGAGCg -3'
miRNA:   3'- -GGCaugAGCUUCGGC-----------UGCUGAaCUUG- -5'
31765 3' -50 NC_006938.1 + 39979 0.7 0.855861
Target:  5'- gCCGaGCUCGAAGCCaGCcGCgaGGACc -3'
miRNA:   3'- -GGCaUGAGCUUCGGcUGcUGaaCUUG- -5'
31765 3' -50 NC_006938.1 + 19809 0.71 0.781193
Target:  5'- uCCGguCUCGAAGCCGGUGGCUguggugcGAGCu -3'
miRNA:   3'- -GGCauGAGCUUCGGCUGCUGAa------CUUG- -5'
31765 3' -50 NC_006938.1 + 25126 0.72 0.760716
Target:  5'- gUCGUugUCGAGGUCGcgccACGACg-GGACg -3'
miRNA:   3'- -GGCAugAGCUUCGGC----UGCUGaaCUUG- -5'
31765 3' -50 NC_006938.1 + 28952 0.72 0.750269
Target:  5'- ---gGCUCGAGGCCGcUGGCcUGGGCg -3'
miRNA:   3'- ggcaUGAGCUUCGGCuGCUGaACUUG- -5'
31765 3' -50 NC_006938.1 + 56156 0.72 0.739698
Target:  5'- cUCGUGCUUGucauAGCCGAgCuuCUUGAACg -3'
miRNA:   3'- -GGCAUGAGCu---UCGGCU-GcuGAACUUG- -5'
31765 3' -50 NC_006938.1 + 11424 0.73 0.718233
Target:  5'- -aGUACUUGAAGUCGuuCGACcgagUGAACu -3'
miRNA:   3'- ggCAUGAGCUUCGGCu-GCUGa---ACUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.