Results 1 - 9 of 9 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 31766 | 3' | -55.9 | NC_006938.1 | + | 14073 | 0.66 | 0.75324 |
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Target: 5'- cUUGAUCGcGaAGACGGUGUcguCGACGGc -3' miRNA: 3'- -AGCUAGCaCcUCUGUCACG---GCUGCCa -5' |
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| 31766 | 3' | -55.9 | NC_006938.1 | + | 39263 | 0.66 | 0.711951 |
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Target: 5'- gUCGAgcaccUCGUGGAGGCGcuuguUGCCGuccaugagcaGCGGg -3' miRNA: 3'- -AGCU-----AGCACCUCUGUc----ACGGC----------UGCCa -5' |
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| 31766 | 3' | -55.9 | NC_006938.1 | + | 31641 | 0.67 | 0.705637 |
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Target: 5'- cCGGUCGUGGAG-CAGagGCgcuuugacgacagggCGGCGGc -3' miRNA: 3'- aGCUAGCACCUCuGUCa-CG---------------GCUGCCa -5' |
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| 31766 | 3' | -55.9 | NC_006938.1 | + | 33223 | 0.67 | 0.657647 |
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Target: 5'- aCGA-CGUGGAGAacggagugagcauCGGUGCUGACauGGa -3' miRNA: 3'- aGCUaGCACCUCU-------------GUCACGGCUG--CCa -5' |
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| 31766 | 3' | -55.9 | NC_006938.1 | + | 2459 | 0.68 | 0.619955 |
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Target: 5'- cUCGGggaagagCGUGGGGACAgccucgucgaucugcGUGgCGugGGUg -3' miRNA: 3'- -AGCUa------GCACCUCUGU---------------CACgGCugCCA- -5' |
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| 31766 | 3' | -55.9 | NC_006938.1 | + | 564 | 0.69 | 0.551606 |
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Target: 5'- gCGAUCGacaugugGGAGGcCGGUGCCGAgaGGc -3' miRNA: 3'- aGCUAGCa------CCUCU-GUCACGGCUg-CCa -5' |
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| 31766 | 3' | -55.9 | NC_006938.1 | + | 8008 | 0.71 | 0.454185 |
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Target: 5'- cUGAUCG-GGAuGGCAGUGCCauacgucgacgccgaGACGGa -3' miRNA: 3'- aGCUAGCaCCU-CUGUCACGG---------------CUGCCa -5' |
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| 31766 | 3' | -55.9 | NC_006938.1 | + | 52174 | 0.73 | 0.343655 |
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Target: 5'- cUCGGUgGaGGAGGCGGUGgaGGCGGUg -3' miRNA: 3'- -AGCUAgCaCCUCUGUCACggCUGCCA- -5' |
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| 31766 | 3' | -55.9 | NC_006938.1 | + | 15178 | 1.07 | 0.001611 |
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Target: 5'- cUCGAUCGUGGAGACAGUGCCGACGGUc -3' miRNA: 3'- -AGCUAGCACCUCUGUCACGGCUGCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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