miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31767 5' -50.9 NC_006938.1 + 9702 0.66 0.939321
Target:  5'- aUCUaCCCGCUGUUcgagCAGGAGaAGGAg -3'
miRNA:   3'- -GGAgGGGCGGCAAaa--GUUUUC-UCCUa -5'
31767 5' -50.9 NC_006938.1 + 46159 0.66 0.916196
Target:  5'- cCCUCCgCGCUcccuucCAGGAGGGGAg -3'
miRNA:   3'- -GGAGGgGCGGcaaaa-GUUUUCUCCUa -5'
31767 5' -50.9 NC_006938.1 + 6917 0.67 0.907687
Target:  5'- gCCUCCCCaGCCGgggccguuccccaagUUCAAuAGAaauGGAg -3'
miRNA:   3'- -GGAGGGG-CGGCaa-------------AAGUUuUCU---CCUa -5'
31767 5' -50.9 NC_006938.1 + 53216 0.68 0.872973
Target:  5'- cUCUUCCCGCCGgagUUGAAGGuGGu- -3'
miRNA:   3'- -GGAGGGGCGGCaaaAGUUUUCuCCua -5'
31767 5' -50.9 NC_006938.1 + 10647 0.68 0.847767
Target:  5'- aCgUCCCCGCCGaguaugUGAcGGAGGAc -3'
miRNA:   3'- -GgAGGGGCGGCaaaa--GUUuUCUCCUa -5'
31767 5' -50.9 NC_006938.1 + 19929 0.69 0.820433
Target:  5'- gCUUCCCCGUCGg---CGu-GGAGGAc -3'
miRNA:   3'- -GGAGGGGCGGCaaaaGUuuUCUCCUa -5'
31767 5' -50.9 NC_006938.1 + 25590 0.69 0.820433
Target:  5'- uCUUCgCCGCCGUgucaacacUCAacuGAGGAGGAc -3'
miRNA:   3'- -GGAGgGGCGGCAaa------AGU---UUUCUCCUa -5'
31767 5' -50.9 NC_006938.1 + 16969 0.7 0.770889
Target:  5'- aCCUCCUCGUCGg---CAGcuGGGGAg -3'
miRNA:   3'- -GGAGGGGCGGCaaaaGUUuuCUCCUa -5'
31767 5' -50.9 NC_006938.1 + 39402 0.7 0.739272
Target:  5'- gCUCCCCGCUcucuucUCAAcGGAGGAc -3'
miRNA:   3'- gGAGGGGCGGcaaa--AGUUuUCUCCUa -5'
31767 5' -50.9 NC_006938.1 + 17457 0.72 0.673316
Target:  5'- ----aCCGCCGUggUCGAGAGGGGGa -3'
miRNA:   3'- ggaggGGCGGCAaaAGUUUUCUCCUa -5'
31767 5' -50.9 NC_006938.1 + 7724 0.74 0.51325
Target:  5'- uCCUCCCCGCCGUcguagaaccggaagCGAagcccagacaggcGAGAGGGUg -3'
miRNA:   3'- -GGAGGGGCGGCAaaa-----------GUU-------------UUCUCCUA- -5'
31767 5' -50.9 NC_006938.1 + 14513 1.08 0.004001
Target:  5'- cCCUCCCCGCCGUUUUCAAAAGAGGAUc -3'
miRNA:   3'- -GGAGGGGCGGCAAAAGUUUUCUCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.