Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31768 | 5' | -54.7 | NC_006938.1 | + | 11973 | 0.66 | 0.773044 |
Target: 5'- cGCCUCAGCCGcguguGGGAgcUGAUccagGgcGUCGAc -3' miRNA: 3'- -CGGGGUCGGC-----UCCU--ACUG----UaaCAGCU- -5' |
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31768 | 5' | -54.7 | NC_006938.1 | + | 11257 | 0.73 | 0.399315 |
Target: 5'- cGCCCUGGCCGccGAUGAggaucgagccgcCGUUGUUGAa -3' miRNA: 3'- -CGGGGUCGGCucCUACU------------GUAACAGCU- -5' |
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31768 | 5' | -54.7 | NC_006938.1 | + | 10648 | 0.65 | 0.808919 |
Target: 5'- cGUCCCcGCCGAGuauGUGACGgaggacggcaaggugGUCGAg -3' miRNA: 3'- -CGGGGuCGGCUCc--UACUGUaa-------------CAGCU- -5' |
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31768 | 5' | -54.7 | NC_006938.1 | + | 6107 | 0.68 | 0.689532 |
Target: 5'- gGCCCUGGCCGAGGcauggGGCGacuaUGcCGGa -3' miRNA: 3'- -CGGGGUCGGCUCCua---CUGUa---ACaGCU- -5' |
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31768 | 5' | -54.7 | NC_006938.1 | + | 4834 | 0.72 | 0.436677 |
Target: 5'- gGCaCCGGCCGAGGAguucGGCGaggugGUCGAg -3' miRNA: 3'- -CGgGGUCGGCUCCUa---CUGUaa---CAGCU- -5' |
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31768 | 5' | -54.7 | NC_006938.1 | + | 2190 | 0.69 | 0.613386 |
Target: 5'- aCCCC-GUCGAGGAaGACcuccaUGUCGAg -3' miRNA: 3'- cGGGGuCGGCUCCUaCUGua---ACAGCU- -5' |
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31768 | 5' | -54.7 | NC_006938.1 | + | 2000 | 0.68 | 0.678733 |
Target: 5'- cGCCUgAGCgCGAGGAU-ACAgagugGUCGGc -3' miRNA: 3'- -CGGGgUCG-GCUCCUAcUGUaa---CAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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