Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31768 | 5' | -54.7 | NC_006938.1 | + | 4834 | 0.72 | 0.436677 |
Target: 5'- gGCaCCGGCCGAGGAguucGGCGaggugGUCGAg -3' miRNA: 3'- -CGgGGUCGGCUCCUa---CUGUaa---CAGCU- -5' |
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31768 | 5' | -54.7 | NC_006938.1 | + | 11257 | 0.73 | 0.399315 |
Target: 5'- cGCCCUGGCCGccGAUGAggaucgagccgcCGUUGUUGAa -3' miRNA: 3'- -CGGGGUCGGCucCUACU------------GUAACAGCU- -5' |
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31768 | 5' | -54.7 | NC_006938.1 | + | 33780 | 0.74 | 0.36406 |
Target: 5'- gGCCCCucGGCCGAgccGGAUGGCugccaUGUCGu -3' miRNA: 3'- -CGGGG--UCGGCU---CCUACUGua---ACAGCu -5' |
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31768 | 5' | -54.7 | NC_006938.1 | + | 21122 | 0.74 | 0.331019 |
Target: 5'- gGUUCCGGCCGAGGGagUGGCAggcGUCGc -3' miRNA: 3'- -CGGGGUCGGCUCCU--ACUGUaa-CAGCu -5' |
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31768 | 5' | -54.7 | NC_006938.1 | + | 56654 | 0.76 | 0.264936 |
Target: 5'- gGCCCCGGCUGGGGA-GGCAagGcCGGg -3' miRNA: 3'- -CGGGGUCGGCUCCUaCUGUaaCaGCU- -5' |
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31768 | 5' | -54.7 | NC_006938.1 | + | 13331 | 0.81 | 0.132658 |
Target: 5'- aCCCCGGCCu-GGAUGGCggUGUCGAc -3' miRNA: 3'- cGGGGUCGGcuCCUACUGuaACAGCU- -5' |
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31768 | 5' | -54.7 | NC_006938.1 | + | 14219 | 1.11 | 0.001096 |
Target: 5'- uGCCCCAGCCGAGGAUGACAUUGUCGAu -3' miRNA: 3'- -CGGGGUCGGCUCCUACUGUAACAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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