miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31769 3' -65 NC_006938.1 + 34896 0.66 0.290524
Target:  5'- --aGCCCCa-CUCCcaGCCGCGACGGa -3'
miRNA:   3'- ugaCGGGGccGAGGc-CGGCGCUGCUc -5'
31769 3' -65 NC_006938.1 + 26972 0.66 0.30851
Target:  5'- cACUGCCCCGGCg-CGGUuacaaguggguguCGUacacgagcuggcacGGCGAGg -3'
miRNA:   3'- -UGACGGGGCCGagGCCG-------------GCG--------------CUGCUC- -5'
31769 3' -65 NC_006938.1 + 7899 0.66 0.318541
Target:  5'- gGCUGCUC--GCUCCuGGUCGuUGACGAGu -3'
miRNA:   3'- -UGACGGGgcCGAGG-CCGGC-GCUGCUC- -5'
31769 3' -65 NC_006938.1 + 12819 0.66 0.318541
Target:  5'- -gUGCCCCGGacgCCaGGCC-CuGCGAGa -3'
miRNA:   3'- ugACGGGGCCga-GG-CCGGcGcUGCUC- -5'
31769 3' -65 NC_006938.1 + 33250 0.66 0.311351
Target:  5'- gGCUGaCCCGGCUUCGuGC-G-GACGGGg -3'
miRNA:   3'- -UGACgGGGCCGAGGC-CGgCgCUGCUC- -5'
31769 3' -65 NC_006938.1 + 30965 0.66 0.311351
Target:  5'- -gUGCCCCGGC-CCguacggguuGGUCGUGGCa-- -3'
miRNA:   3'- ugACGGGGCCGaGG---------CCGGCGCUGcuc -5'
31769 3' -65 NC_006938.1 + 31697 0.66 0.30851
Target:  5'- cCUGCCacgaCCGGCUCCaGGacacccucgaccgCGCGACGGa -3'
miRNA:   3'- uGACGG----GGCCGAGG-CCg------------GCGCUGCUc -5'
31769 3' -65 NC_006938.1 + 14282 0.66 0.293237
Target:  5'- uGCUGCCCUGG-UCCGGgaugagagacuucuuCUugGCGAUGAGc -3'
miRNA:   3'- -UGACGGGGCCgAGGCC---------------GG--CGCUGCUC- -5'
31769 3' -65 NC_006938.1 + 21140 0.66 0.290524
Target:  5'- gGCagGCgUC-GCUCCGGCCGCGucgGCGAa -3'
miRNA:   3'- -UGa-CGgGGcCGAGGCCGGCGC---UGCUc -5'
31769 3' -65 NC_006938.1 + 15777 0.66 0.310639
Target:  5'- --aGCCgacgacuugaacaUUGGCUCCGGCCG-GAgGAGa -3'
miRNA:   3'- ugaCGG-------------GGCCGAGGCCGGCgCUgCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.