miRNA display CGI


Results 21 - 30 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31769 3' -65 NC_006938.1 + 31019 0.71 0.135159
Target:  5'- --aGCCgagaaagcaUGGUUCUGGCCGCGugGAGa -3'
miRNA:   3'- ugaCGGg--------GCCGAGGCCGGCGCugCUC- -5'
31769 3' -65 NC_006938.1 + 31697 0.66 0.30851
Target:  5'- cCUGCCacgaCCGGCUCCaGGacacccucgaccgCGCGACGGa -3'
miRNA:   3'- uGACGG----GGCCGAGG-CCg------------GCGCUGCUc -5'
31769 3' -65 NC_006938.1 + 31849 0.69 0.185228
Target:  5'- gGCUGCCCUGGCUgacgcgcccuugcggCCGGuCUGCG-CGuAGu -3'
miRNA:   3'- -UGACGGGGCCGA---------------GGCC-GGCGCuGC-UC- -5'
31769 3' -65 NC_006938.1 + 33250 0.66 0.311351
Target:  5'- gGCUGaCCCGGCUUCGuGC-G-GACGGGg -3'
miRNA:   3'- -UGACgGGGCCGAGGC-CGgCgCUGCUC- -5'
31769 3' -65 NC_006938.1 + 34896 0.66 0.290524
Target:  5'- --aGCCCCa-CUCCcaGCCGCGACGGa -3'
miRNA:   3'- ugaCGGGGccGAGGc-CGGCGCUGCUc -5'
31769 3' -65 NC_006938.1 + 34911 0.67 0.245614
Target:  5'- --cGCCCCGGCcgaccugguccgaUCaUGGCCGCGAaGAa -3'
miRNA:   3'- ugaCGGGGCCG-------------AG-GCCGGCGCUgCUc -5'
31769 3' -65 NC_006938.1 + 46583 0.74 0.082138
Target:  5'- cACgGCCCCGcGCUCCccaGCUGCcGACGAGg -3'
miRNA:   3'- -UGaCGGGGC-CGAGGc--CGGCG-CUGCUC- -5'
31769 3' -65 NC_006938.1 + 48337 0.75 0.066343
Target:  5'- cCUGaaCCCCGGCUCgggCGGCgGUGACGAGc -3'
miRNA:   3'- uGAC--GGGGCCGAG---GCCGgCGCUGCUC- -5'
31769 3' -65 NC_006938.1 + 48392 0.74 0.078715
Target:  5'- gGCUGCUcguacaccguggucaCCGGCUCCGGa-GCGACGAc -3'
miRNA:   3'- -UGACGG---------------GGCCGAGGCCggCGCUGCUc -5'
31769 3' -65 NC_006938.1 + 63341 0.68 0.207638
Target:  5'- cCUGCCgaaGGUUCCgaagGGCgGCGGCGAGc -3'
miRNA:   3'- uGACGGgg-CCGAGG----CCGgCGCUGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.