miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31769 5' -58 NC_006938.1 + 33779 0.66 0.587513
Target:  5'- uGGcCCCUCgGCc--GAGCcGGAUGGCu -3'
miRNA:   3'- -UC-GGGAGgUGcuaCUCGuCCUACCGu -5'
31769 5' -58 NC_006938.1 + 3767 0.66 0.587513
Target:  5'- cGCUCgucgggCGCGGUG-GCaAGGGUGGCAu -3'
miRNA:   3'- uCGGGag----GUGCUACuCG-UCCUACCGU- -5'
31769 5' -58 NC_006938.1 + 40376 0.66 0.566061
Target:  5'- -cUCCUCCAgGGUcGGCAGG-UGGUAg -3'
miRNA:   3'- ucGGGAGGUgCUAcUCGUCCuACCGU- -5'
31769 5' -58 NC_006938.1 + 37904 0.66 0.566061
Target:  5'- uGGCCCgcgUCUcaggGCGgcGAGCGGGcgGUGGCc -3'
miRNA:   3'- -UCGGG---AGG----UGCuaCUCGUCC--UACCGu -5'
31769 5' -58 NC_006938.1 + 29656 0.66 0.544816
Target:  5'- uGGCCUUCuCGCGGagGGGCuccauGGUGGCAg -3'
miRNA:   3'- -UCGGGAG-GUGCUa-CUCGuc---CUACCGU- -5'
31769 5' -58 NC_006938.1 + 36026 0.67 0.534289
Target:  5'- gAGCCa-CCGCGAacGGGCGGGugcGUGGCc -3'
miRNA:   3'- -UCGGgaGGUGCUa-CUCGUCC---UACCGu -5'
31769 5' -58 NC_006938.1 + 12504 0.67 0.534289
Target:  5'- uGUUgUUgGCGAUGGuCAGGAUGGCGc -3'
miRNA:   3'- uCGGgAGgUGCUACUcGUCCUACCGU- -5'
31769 5' -58 NC_006938.1 + 59303 0.67 0.523836
Target:  5'- cGUCCUCCugGAacGGCAGGuauccGGCc -3'
miRNA:   3'- uCGGGAGGugCUacUCGUCCua---CCGu -5'
31769 5' -58 NC_006938.1 + 6750 0.67 0.523836
Target:  5'- gAGCUCUuuGCGAUGGGcCAGGGcuuccaugacaUGGUc -3'
miRNA:   3'- -UCGGGAggUGCUACUC-GUCCU-----------ACCGu -5'
31769 5' -58 NC_006938.1 + 55556 0.67 0.513461
Target:  5'- aAGCCaccucCCAUGAcGGGCGGGAgcugGGCc -3'
miRNA:   3'- -UCGGga---GGUGCUaCUCGUCCUa---CCGu -5'
31769 5' -58 NC_006938.1 + 6426 0.67 0.492973
Target:  5'- aAGUCCUCCACGAUgGAGCugagAGcGAUGcccuGCGu -3'
miRNA:   3'- -UCGGGAGGUGCUA-CUCG----UC-CUAC----CGU- -5'
31769 5' -58 NC_006938.1 + 39289 0.68 0.462973
Target:  5'- uGCCgUCCAUGAgcAGCGGGucgaaguccauGUGGCGg -3'
miRNA:   3'- uCGGgAGGUGCUacUCGUCC-----------UACCGU- -5'
31769 5' -58 NC_006938.1 + 48775 0.68 0.457088
Target:  5'- cGCCCUggGCGAUggucgacucaacgugGAGCAGGAcgaGGCAa -3'
miRNA:   3'- uCGGGAggUGCUA---------------CUCGUCCUa--CCGU- -5'
31769 5' -58 NC_006938.1 + 27543 0.68 0.453186
Target:  5'- cGCCCgUUCGCGGUG-GCucgaugcagGGGAUGGUg -3'
miRNA:   3'- uCGGG-AGGUGCUACuCG---------UCCUACCGu -5'
31769 5' -58 NC_006938.1 + 49371 0.68 0.453186
Target:  5'- cGCCCUCUgaucgACGAUGAcgGCGagccGGUGGCAu -3'
miRNA:   3'- uCGGGAGG-----UGCUACU--CGUc---CUACCGU- -5'
31769 5' -58 NC_006938.1 + 43823 0.68 0.424523
Target:  5'- cGCCUUCCGCaccgcgucGGGCAGcGGUGGCu -3'
miRNA:   3'- uCGGGAGGUGcua-----CUCGUC-CUACCGu -5'
31769 5' -58 NC_006938.1 + 14803 0.69 0.379253
Target:  5'- cGCCCaggGCGAUGAGCGGGAUGu-- -3'
miRNA:   3'- uCGGGaggUGCUACUCGUCCUACcgu -5'
31769 5' -58 NC_006938.1 + 52380 0.71 0.321537
Target:  5'- cAGgCCUCgGCGucGAGgAGGAUGGCGg -3'
miRNA:   3'- -UCgGGAGgUGCuaCUCgUCCUACCGU- -5'
31769 5' -58 NC_006938.1 + 33051 0.72 0.269969
Target:  5'- uGGCCUUCaGCGA-GAGCGGGAcaccgucgcacugUGGCAc -3'
miRNA:   3'- -UCGGGAGgUGCUaCUCGUCCU-------------ACCGU- -5'
31769 5' -58 NC_006938.1 + 17403 0.72 0.250902
Target:  5'- -cCCCUCCugGAaggGAGCgcggAGGGUGGCc -3'
miRNA:   3'- ucGGGAGGugCUa--CUCG----UCCUACCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.