miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31770 3' -58.1 NC_006938.1 + 39213 0.66 0.627806
Target:  5'- gUGGUCUCUGCacccugucGGUCacgCCuACGUCg -3'
miRNA:   3'- uGCCAGAGACGcu------CCAGga-GG-UGCAG- -5'
31770 3' -58.1 NC_006938.1 + 2096 0.66 0.617124
Target:  5'- gUGGUCUUUGUGgagccggacaGGGUCaCUCC-UGUCa -3'
miRNA:   3'- uGCCAGAGACGC----------UCCAG-GAGGuGCAG- -5'
31770 3' -58.1 NC_006938.1 + 55376 0.66 0.617124
Target:  5'- uCGG-CUCgacgUGCGAuGUCCUCCauugGCGUCc -3'
miRNA:   3'- uGCCaGAG----ACGCUcCAGGAGG----UGCAG- -5'
31770 3' -58.1 NC_006938.1 + 30880 0.66 0.605389
Target:  5'- cCGGUCU---CGGGGUCCUCgaacucgUACGUCu -3'
miRNA:   3'- uGCCAGAgacGCUCCAGGAG-------GUGCAG- -5'
31770 3' -58.1 NC_006938.1 + 36164 0.67 0.564067
Target:  5'- cGCGGUCUCauaGCGcAGGUucccCCUCUucuUGUCg -3'
miRNA:   3'- -UGCCAGAGa--CGC-UCCA----GGAGGu--GCAG- -5'
31770 3' -58.1 NC_006938.1 + 3300 0.67 0.564067
Target:  5'- -aGGUCgcCUGUGAGGUCC-CacuCGUCc -3'
miRNA:   3'- ugCCAGa-GACGCUCCAGGaGgu-GCAG- -5'
31770 3' -58.1 NC_006938.1 + 54365 0.67 0.564067
Target:  5'- cUGGUCg--GCGAGGcCCUCUACa-- -3'
miRNA:   3'- uGCCAGagaCGCUCCaGGAGGUGcag -5'
31770 3' -58.1 NC_006938.1 + 44677 0.67 0.532792
Target:  5'- cCGGUCcUUGCaGAGGUUCUCCAUc-- -3'
miRNA:   3'- uGCCAGaGACG-CUCCAGGAGGUGcag -5'
31770 3' -58.1 NC_006938.1 + 14631 0.67 0.522502
Target:  5'- gACGGUCgggaacCU-CGAGGUCCgguucgCCACGg- -3'
miRNA:   3'- -UGCCAGa-----GAcGCUCCAGGa-----GGUGCag -5'
31770 3' -58.1 NC_006938.1 + 5117 0.67 0.51229
Target:  5'- -aGGUCUCcGCGuugacGUCCUCCugGaUCu -3'
miRNA:   3'- ugCCAGAGaCGCuc---CAGGAGGugC-AG- -5'
31770 3' -58.1 NC_006938.1 + 43612 0.68 0.472324
Target:  5'- gACGGUcCUCcagGCGcucccuGGaGUCCUCCACGcCg -3'
miRNA:   3'- -UGCCA-GAGa--CGC------UC-CAGGAGGUGCaG- -5'
31770 3' -58.1 NC_006938.1 + 25348 0.69 0.424696
Target:  5'- cAUGG-CUCUGaGAGGagCCUCCGCGcCa -3'
miRNA:   3'- -UGCCaGAGACgCUCCa-GGAGGUGCaG- -5'
31770 3' -58.1 NC_006938.1 + 59241 0.7 0.397532
Target:  5'- cGCGGUCUCcagGCGcGGGUUCUCCuuGa- -3'
miRNA:   3'- -UGCCAGAGa--CGC-UCCAGGAGGugCag -5'
31770 3' -58.1 NC_006938.1 + 42184 0.7 0.397532
Target:  5'- -gGGUCcgaUCUGCGAGGUCCUugcCUACa-- -3'
miRNA:   3'- ugCCAG---AGACGCUCCAGGA---GGUGcag -5'
31770 3' -58.1 NC_006938.1 + 34783 0.76 0.146624
Target:  5'- cACGGUCUCUGgguCGAGGUCCggCACGa- -3'
miRNA:   3'- -UGCCAGAGAC---GCUCCAGGagGUGCag -5'
31770 3' -58.1 NC_006938.1 + 11582 1.08 0.000802
Target:  5'- cACGGUCUCUGCGAGGUCCUCCACGUCc -3'
miRNA:   3'- -UGCCAGAGACGCUCCAGGAGGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.