miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31770 5' -63.4 NC_006938.1 + 33769 0.66 0.345841
Target:  5'- -uGGUcCGGGCuGGCcCCucgGCCGAGCCgGa -3'
miRNA:   3'- guCUA-GCCCG-CCGuGG---CGGCUCGGgU- -5'
31770 5' -63.4 NC_006938.1 + 33897 0.66 0.338085
Target:  5'- gCGGcagGGGCGGC-UCGUCGAGCCa- -3'
miRNA:   3'- -GUCuagCCCGCCGuGGCGGCUCGGgu -5'
31770 5' -63.4 NC_006938.1 + 63348 0.66 0.330458
Target:  5'- aAGGUUccgaaGGGCGGCGgCgaGCCGGucGCCCAc -3'
miRNA:   3'- gUCUAG-----CCCGCCGUgG--CGGCU--CGGGU- -5'
31770 5' -63.4 NC_006938.1 + 10148 0.67 0.322214
Target:  5'- gCAGGUCGGucucgGUgagGGCACUGCUGuccaggaAGCCCAg -3'
miRNA:   3'- -GUCUAGCC-----CG---CCGUGGCGGC-------UCGGGU- -5'
31770 5' -63.4 NC_006938.1 + 60681 0.67 0.294233
Target:  5'- uCAGGUCcGGCGGC-CCGCC-AGUCgCGa -3'
miRNA:   3'- -GUCUAGcCCGCCGuGGCGGcUCGG-GU- -5'
31770 5' -63.4 NC_006938.1 + 39108 0.67 0.28737
Target:  5'- cCAGA---GGCGGUGCCacggGCCGAaGCCCAu -3'
miRNA:   3'- -GUCUagcCCGCCGUGG----CGGCU-CGGGU- -5'
31770 5' -63.4 NC_006938.1 + 35401 0.67 0.28737
Target:  5'- gUAGGgcagGGGCGGCaACCGCCucccgaauGCCCGu -3'
miRNA:   3'- -GUCUag--CCCGCCG-UGGCGGcu------CGGGU- -5'
31770 5' -63.4 NC_006938.1 + 22723 0.67 0.280634
Target:  5'- -cGAUUGGGUGGUcCCgGCCGGuCCCGa -3'
miRNA:   3'- guCUAGCCCGCCGuGG-CGGCUcGGGU- -5'
31770 5' -63.4 NC_006938.1 + 24847 0.68 0.254326
Target:  5'- -uGGUCGcgaugaaGGCGGCcuggagaCGCCGAGUCCAg -3'
miRNA:   3'- guCUAGC-------CCGCCGug-----GCGGCUCGGGU- -5'
31770 5' -63.4 NC_006938.1 + 48345 0.68 0.248829
Target:  5'- cCGGcUCGGGCGGCGgUGaCGAGCgCGu -3'
miRNA:   3'- -GUCuAGCCCGCCGUgGCgGCUCGgGU- -5'
31770 5' -63.4 NC_006938.1 + 59418 0.68 0.242837
Target:  5'- ---uUCGaGUGGCGCCGCCGGaCCCGg -3'
miRNA:   3'- gucuAGCcCGCCGUGGCGGCUcGGGU- -5'
31770 5' -63.4 NC_006938.1 + 23691 0.69 0.236385
Target:  5'- uCGGccaGGGCGGCAUgGCCGAgaugcucgagcgcGCCCu -3'
miRNA:   3'- -GUCuagCCCGCCGUGgCGGCU-------------CGGGu -5'
31770 5' -63.4 NC_006938.1 + 1885 0.71 0.158312
Target:  5'- aCAGAggucCGGGCcGCGCCGCCGAagcGUUCAa -3'
miRNA:   3'- -GUCUa---GCCCGcCGUGGCGGCU---CGGGU- -5'
31770 5' -63.4 NC_006938.1 + 11616 1.07 0.000297
Target:  5'- gCAGAUCGGGCGGCACCGCCGAGCCCAc -3'
miRNA:   3'- -GUCUAGCCCGCCGUGGCGGCUCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.