miRNA display CGI


Results 41 - 60 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31771 3' -58 NC_006938.1 + 42811 0.7 0.402689
Target:  5'- gCGAAGu--UCACCuuguCCGCCUCCAUCa -3'
miRNA:   3'- -GCUUCuacGGUGGu---GGCGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 43820 0.66 0.633481
Target:  5'- uGuGGAUGCuCACgGCCGUCacacCCACCu -3'
miRNA:   3'- gCuUCUACG-GUGgUGGCGGa---GGUGGc -5'
31771 3' -58 NC_006938.1 + 44206 0.66 0.644142
Target:  5'- gGAAGAggaaCACCuuGCCcuCCUCCGCCGc -3'
miRNA:   3'- gCUUCUacg-GUGG--UGGc-GGAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 44215 0.74 0.215365
Target:  5'- uCGAcGGUGCCauuGCUGCUGCCUUCACUGg -3'
miRNA:   3'- -GCUuCUACGG---UGGUGGCGGAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 44242 0.8 0.088978
Target:  5'- uGAAGAaccgUGCCACCuCCgGCCUCCGCCc -3'
miRNA:   3'- gCUUCU----ACGGUGGuGG-CGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 45040 0.69 0.448815
Target:  5'- uCGAGGGccGCCcagagGCCACCGUCgUCCgGCCGg -3'
miRNA:   3'- -GCUUCUa-CGG-----UGGUGGCGG-AGG-UGGC- -5'
31771 3' -58 NC_006938.1 + 47449 0.66 0.601526
Target:  5'- aGAAGGgcGUCAUCACCGaCCUCgaCGCCu -3'
miRNA:   3'- gCUUCUa-CGGUGGUGGC-GGAG--GUGGc -5'
31771 3' -58 NC_006938.1 + 48377 0.67 0.538482
Target:  5'- uCGGAGAccGUCGgCACUGUCUCCACg- -3'
miRNA:   3'- -GCUUCUa-CGGUgGUGGCGGAGGUGgc -5'
31771 3' -58 NC_006938.1 + 49609 0.66 0.612164
Target:  5'- cCGAgGGAUGCCuCCAagguUCGCCgagaUCACCGa -3'
miRNA:   3'- -GCU-UCUACGGuGGU----GGCGGa---GGUGGC- -5'
31771 3' -58 NC_006938.1 + 49894 0.69 0.430008
Target:  5'- gGGAGGuUGCCACaguGCCGCgCUCCAUg- -3'
miRNA:   3'- gCUUCU-ACGGUGg--UGGCG-GAGGUGgc -5'
31771 3' -58 NC_006938.1 + 51021 0.75 0.184391
Target:  5'- uCGAcGcUGCCACCGggGCCUCCGCCGc -3'
miRNA:   3'- -GCUuCuACGGUGGUggCGGAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 51405 0.67 0.538482
Target:  5'- gCGuguGGccgGCCAUCGCCGCCgCUGCCa -3'
miRNA:   3'- -GCu--UCua-CGGUGGUGGCGGaGGUGGc -5'
31771 3' -58 NC_006938.1 + 52444 0.66 0.644142
Target:  5'- gGucGGUGUCgggcgagaACCACuCGCCUCCuGCCa -3'
miRNA:   3'- gCuuCUACGG--------UGGUG-GCGGAGG-UGGc -5'
31771 3' -58 NC_006938.1 + 52884 0.67 0.559297
Target:  5'- gCGAGGAUuGCCccucgACCACCuuGCCgUCCuCCGu -3'
miRNA:   3'- -GCUUCUA-CGG-----UGGUGG--CGG-AGGuGGC- -5'
31771 3' -58 NC_006938.1 + 53721 0.67 0.56979
Target:  5'- aGGAGuUGCaCGCCAgCGUCUCCaggACCu -3'
miRNA:   3'- gCUUCuACG-GUGGUgGCGGAGG---UGGc -5'
31771 3' -58 NC_006938.1 + 54414 0.68 0.487735
Target:  5'- cCGGAGucgagGCCACCACUGuCCUCgCgGCCc -3'
miRNA:   3'- -GCUUCua---CGGUGGUGGC-GGAG-G-UGGc -5'
31771 3' -58 NC_006938.1 + 55176 0.67 0.542625
Target:  5'- uGAGGAgguacgucuccccgGCguCCugCGCgUCCGCCGc -3'
miRNA:   3'- gCUUCUa-------------CGguGGugGCGgAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 56398 0.66 0.601526
Target:  5'- uGAGcucgGCCAuUCGCCGUCUCCAgCGg -3'
miRNA:   3'- gCUUcua-CGGU-GGUGGCGGAGGUgGC- -5'
31771 3' -58 NC_006938.1 + 59786 0.66 0.633481
Target:  5'- gGgcGAUGCCACCcUUGCCaCCGCg- -3'
miRNA:   3'- gCuuCUACGGUGGuGGCGGaGGUGgc -5'
31771 3' -58 NC_006938.1 + 60784 0.66 0.644142
Target:  5'- aGGAGAcaacGCgGCCACUGUCg-CACCGg -3'
miRNA:   3'- gCUUCUa---CGgUGGUGGCGGagGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.