miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31771 3' -58 NC_006938.1 + 49894 0.69 0.430008
Target:  5'- gGGAGGuUGCCACaguGCCGCgCUCCAUg- -3'
miRNA:   3'- gCUUCU-ACGGUGg--UGGCG-GAGGUGgc -5'
31771 3' -58 NC_006938.1 + 3976 0.71 0.335464
Target:  5'- uGAAGGUGCuUGCCGCgCGCUUCUgaGCCGc -3'
miRNA:   3'- gCUUCUACG-GUGGUG-GCGGAGG--UGGC- -5'
31771 3' -58 NC_006938.1 + 45040 0.69 0.448815
Target:  5'- uCGAGGGccGCCcagagGCCACCGUCgUCCgGCCGg -3'
miRNA:   3'- -GCUUCUa-CGG-----UGGUGGCGG-AGG-UGGC- -5'
31771 3' -58 NC_006938.1 + 15153 0.69 0.458387
Target:  5'- aGGAGGUGUUguagGCCgugGCCGCCUCgAUCGu -3'
miRNA:   3'- gCUUCUACGG----UGG---UGGCGGAGgUGGC- -5'
31771 3' -58 NC_006938.1 + 44242 0.8 0.088978
Target:  5'- uGAAGAaccgUGCCACCuCCgGCCUCCGCCc -3'
miRNA:   3'- gCUUCU----ACGGUGGuGG-CGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 42811 0.7 0.402689
Target:  5'- gCGAAGu--UCACCuuguCCGCCUCCAUCa -3'
miRNA:   3'- -GCUUCuacGGUGGu---GGCGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 790 0.68 0.468067
Target:  5'- gCGGAGGucuccaguguUGCCAgCCggugugGCCGCCUCCGugcCCGa -3'
miRNA:   3'- -GCUUCU----------ACGGU-GG------UGGCGGAGGU---GGC- -5'
31771 3' -58 NC_006938.1 + 12849 0.78 0.127013
Target:  5'- gGAGGAUGCCAgCCugUGCCUCuugggcgcucgCACCGg -3'
miRNA:   3'- gCUUCUACGGU-GGugGCGGAG-----------GUGGC- -5'
31771 3' -58 NC_006938.1 + 11342 0.68 0.477851
Target:  5'- -aAAGA-GCC-CU-CCGCCUCCACCa -3'
miRNA:   3'- gcUUCUaCGGuGGuGGCGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 857 0.74 0.226642
Target:  5'- aCGAAGAUgcGCCAgaCGCCGCC-CUGCCGa -3'
miRNA:   3'- -GCUUCUA--CGGUg-GUGGCGGaGGUGGC- -5'
31771 3' -58 NC_006938.1 + 11373 1.08 0.000827
Target:  5'- cCGAAGAUGCCACCACCGCCUCCACCGc -3'
miRNA:   3'- -GCUUCUACGGUGGUGGCGGAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 36271 0.69 0.448815
Target:  5'- gGAuGuAUGCCACCGCUGaCCagCGCCGc -3'
miRNA:   3'- gCUuC-UACGGUGGUGGC-GGagGUGGC- -5'
31771 3' -58 NC_006938.1 + 4350 0.69 0.448815
Target:  5'- ------cGCCGCCagaACCGCCUCCAgCa -3'
miRNA:   3'- gcuucuaCGGUGG---UGGCGGAGGUgGc -5'
31771 3' -58 NC_006938.1 + 25158 0.69 0.448815
Target:  5'- uGAAGGUcagGCCGCCACCGgagaggaguCCaUCCAUCa -3'
miRNA:   3'- gCUUCUA---CGGUGGUGGC---------GG-AGGUGGc -5'
31771 3' -58 NC_006938.1 + 10431 0.68 0.496712
Target:  5'- uGggGAUGUucggcgCGCCAacugcguCCGCCcacUCCGCCGu -3'
miRNA:   3'- gCuuCUACG------GUGGU-------GGCGG---AGGUGGC- -5'
31771 3' -58 NC_006938.1 + 30945 0.7 0.39383
Target:  5'- cCGucuGGcgGCCAagaaggaCGCCGCCUUCGCCc -3'
miRNA:   3'- -GCu--UCuaCGGUg------GUGGCGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 51405 0.67 0.538482
Target:  5'- gCGuguGGccgGCCAUCGCCGCCgCUGCCa -3'
miRNA:   3'- -GCu--UCua-CGGUGGUGGCGGaGGUGGc -5'
31771 3' -58 NC_006938.1 + 60784 0.66 0.644142
Target:  5'- aGGAGAcaacGCgGCCACUGUCg-CACCGg -3'
miRNA:   3'- gCUUCUa---CGgUGGUGGCGGagGUGGC- -5'
31771 3' -58 NC_006938.1 + 43820 0.66 0.633481
Target:  5'- uGuGGAUGCuCACgGCCGUCacacCCACCu -3'
miRNA:   3'- gCuUCUACG-GUGgUGGCGGa---GGUGGc -5'
31771 3' -58 NC_006938.1 + 48377 0.67 0.538482
Target:  5'- uCGGAGAccGUCGgCACUGUCUCCACg- -3'
miRNA:   3'- -GCUUCUa-CGGUgGUGGCGGAGGUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.