miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31771 3' -58 NC_006938.1 + 52884 0.67 0.559297
Target:  5'- gCGAGGAUuGCCccucgACCACCuuGCCgUCCuCCGu -3'
miRNA:   3'- -GCUUCUA-CGG-----UGGUGG--CGG-AGGuGGC- -5'
31771 3' -58 NC_006938.1 + 4977 0.67 0.558251
Target:  5'- gGggGAcagUGCCcgGCCAUccacgagCGCC-CCACCGa -3'
miRNA:   3'- gCuuCU---ACGG--UGGUG-------GCGGaGGUGGC- -5'
31771 3' -58 NC_006938.1 + 42755 0.67 0.555115
Target:  5'- gGgcGAUGCCACCACCgagggcaGCgUCCGuuucaacgcguccuCCGa -3'
miRNA:   3'- gCuuCUACGGUGGUGG-------CGgAGGU--------------GGC- -5'
31771 3' -58 NC_006938.1 + 24382 0.67 0.548859
Target:  5'- gGGAG-UGCagggucucagaACCACCGCCguugCCugCGg -3'
miRNA:   3'- gCUUCuACGg----------UGGUGGCGGa---GGugGC- -5'
31771 3' -58 NC_006938.1 + 55176 0.67 0.542625
Target:  5'- uGAGGAgguacgucuccccgGCguCCugCGCgUCCGCCGc -3'
miRNA:   3'- gCUUCUa-------------CGguGGugGCGgAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 51405 0.67 0.538482
Target:  5'- gCGuguGGccgGCCAUCGCCGCCgCUGCCa -3'
miRNA:   3'- -GCu--UCua-CGGUGGUGGCGGaGGUGGc -5'
31771 3' -58 NC_006938.1 + 48377 0.67 0.538482
Target:  5'- uCGGAGAccGUCGgCACUGUCUCCACg- -3'
miRNA:   3'- -GCUUCUa-CGGUgGUGGCGGAGGUGgc -5'
31771 3' -58 NC_006938.1 + 42173 0.68 0.517938
Target:  5'- cCGAGGGgcuUGUCACCcggACCGgCUCgGCCa -3'
miRNA:   3'- -GCUUCU---ACGGUGG---UGGCgGAGgUGGc -5'
31771 3' -58 NC_006938.1 + 10431 0.68 0.496712
Target:  5'- uGggGAUGUucggcgCGCCAacugcguCCGCCcacUCCGCCGu -3'
miRNA:   3'- gCuuCUACG------GUGGU-------GGCGG---AGGUGGC- -5'
31771 3' -58 NC_006938.1 + 40778 0.68 0.487735
Target:  5'- uCGAcGGUGUCAagGCCGuCCUCCAgCGg -3'
miRNA:   3'- -GCUuCUACGGUggUGGC-GGAGGUgGC- -5'
31771 3' -58 NC_006938.1 + 54414 0.68 0.487735
Target:  5'- cCGGAGucgagGCCACCACUGuCCUCgCgGCCc -3'
miRNA:   3'- -GCUUCua---CGGUGGUGGC-GGAG-G-UGGc -5'
31771 3' -58 NC_006938.1 + 11342 0.68 0.477851
Target:  5'- -aAAGA-GCC-CU-CCGCCUCCACCa -3'
miRNA:   3'- gcUUCUaCGGuGGuGGCGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 12461 0.68 0.477851
Target:  5'- uGcuGAUcGCCACgAUCGCCUuCCGCUGg -3'
miRNA:   3'- gCuuCUA-CGGUGgUGGCGGA-GGUGGC- -5'
31771 3' -58 NC_006938.1 + 790 0.68 0.468067
Target:  5'- gCGGAGGucuccaguguUGCCAgCCggugugGCCGCCUCCGugcCCGa -3'
miRNA:   3'- -GCUUCU----------ACGGU-GG------UGGCGGAGGU---GGC- -5'
31771 3' -58 NC_006938.1 + 15153 0.69 0.458387
Target:  5'- aGGAGGUGUUguagGCCgugGCCGCCUCgAUCGu -3'
miRNA:   3'- gCUUCUACGG----UGG---UGGCGGAGgUGGC- -5'
31771 3' -58 NC_006938.1 + 4350 0.69 0.448815
Target:  5'- ------cGCCGCCagaACCGCCUCCAgCa -3'
miRNA:   3'- gcuucuaCGGUGG---UGGCGGAGGUgGc -5'
31771 3' -58 NC_006938.1 + 36271 0.69 0.448815
Target:  5'- gGAuGuAUGCCACCGCUGaCCagCGCCGc -3'
miRNA:   3'- gCUuC-UACGGUGGUGGC-GGagGUGGC- -5'
31771 3' -58 NC_006938.1 + 45040 0.69 0.448815
Target:  5'- uCGAGGGccGCCcagagGCCACCGUCgUCCgGCCGg -3'
miRNA:   3'- -GCUUCUa-CGG-----UGGUGGCGG-AGG-UGGC- -5'
31771 3' -58 NC_006938.1 + 25158 0.69 0.448815
Target:  5'- uGAAGGUcagGCCGCCACCGgagaggaguCCaUCCAUCa -3'
miRNA:   3'- gCUUCUA---CGGUGGUGGC---------GG-AGGUGGc -5'
31771 3' -58 NC_006938.1 + 37518 0.69 0.443125
Target:  5'- uCGAGGccGCCGCCGCUggcaagcuggacgagGCCgCCAUCGa -3'
miRNA:   3'- -GCUUCuaCGGUGGUGG---------------CGGaGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.