Results 21 - 33 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31772 | 5' | -57.3 | NC_006938.1 | + | 30346 | 0.69 | 0.474769 |
Target: 5'- aCUCCGuuCUCCACGUCGUagaUGGaggaguCAGCc -3' miRNA: 3'- -GAGGUgcGAGGUGCAGCAg--ACC------GUCG- -5' |
|||||||
31772 | 5' | -57.3 | NC_006938.1 | + | 62679 | 0.69 | 0.473785 |
Target: 5'- -aCCugGUaCCACGUCGcugccacUCggcagGGCGGCg -3' miRNA: 3'- gaGGugCGaGGUGCAGC-------AGa----CCGUCG- -5' |
|||||||
31772 | 5' | -57.3 | NC_006938.1 | + | 11599 | 0.69 | 0.46497 |
Target: 5'- cCUCCACGUccUUCGCGgcaGaUCgGGCGGCa -3' miRNA: 3'- -GAGGUGCG--AGGUGCag-C-AGaCCGUCG- -5' |
|||||||
31772 | 5' | -57.3 | NC_006938.1 | + | 57785 | 0.69 | 0.459141 |
Target: 5'- uCUCCGagaGCUCCgucACGUucucgucgacggccaCGUCUGGUGGUg -3' miRNA: 3'- -GAGGUg--CGAGG---UGCA---------------GCAGACCGUCG- -5' |
|||||||
31772 | 5' | -57.3 | NC_006938.1 | + | 41915 | 0.69 | 0.455277 |
Target: 5'- -aCCGCGCgcggcCCACGUCGccCUGGUcaccgccguccAGCa -3' miRNA: 3'- gaGGUGCGa----GGUGCAGCa-GACCG-----------UCG- -5' |
|||||||
31772 | 5' | -57.3 | NC_006938.1 | + | 42286 | 0.7 | 0.408531 |
Target: 5'- aUCCGCuuccGCUCCGCGUCGaacagCgacgGGuCGGCg -3' miRNA: 3'- gAGGUG----CGAGGUGCAGCa----Ga---CC-GUCG- -5' |
|||||||
31772 | 5' | -57.3 | NC_006938.1 | + | 39976 | 0.71 | 0.356569 |
Target: 5'- cCUCCGuCGC-CCACGgcuucaCGUCUGGCGa- -3' miRNA: 3'- -GAGGU-GCGaGGUGCa-----GCAGACCGUcg -5' |
|||||||
31772 | 5' | -57.3 | NC_006938.1 | + | 43817 | 0.72 | 0.332386 |
Target: 5'- gUCCAgCGCcuUCCGCaccgCGUCgGGCAGCg -3' miRNA: 3'- gAGGU-GCG--AGGUGca--GCAGaCCGUCG- -5' |
|||||||
31772 | 5' | -57.3 | NC_006938.1 | + | 44001 | 0.72 | 0.30132 |
Target: 5'- aCUCUcCGCUCCGCGauguucaUCgGUCUGGCcucGGCg -3' miRNA: 3'- -GAGGuGCGAGGUGC-------AG-CAGACCG---UCG- -5' |
|||||||
31772 | 5' | -57.3 | NC_006938.1 | + | 41711 | 0.73 | 0.273217 |
Target: 5'- aUCgACGCgaUCACGUCGUCUGggaucucGCAGCg -3' miRNA: 3'- gAGgUGCGa-GGUGCAGCAGAC-------CGUCG- -5' |
|||||||
31772 | 5' | -57.3 | NC_006938.1 | + | 34686 | 0.75 | 0.204108 |
Target: 5'- cCUCCGCGCagUCCGgGUCGUCgaucugcacgacucGGCAGUu -3' miRNA: 3'- -GAGGUGCG--AGGUgCAGCAGa-------------CCGUCG- -5' |
|||||||
31772 | 5' | -57.3 | NC_006938.1 | + | 46160 | 0.77 | 0.149867 |
Target: 5'- cCUCCGCGCUCCcuuccaggaggggaGgGUggacaUGUCUGGCGGCu -3' miRNA: 3'- -GAGGUGCGAGG--------------UgCA-----GCAGACCGUCG- -5' |
|||||||
31772 | 5' | -57.3 | NC_006938.1 | + | 10984 | 1.1 | 0.000647 |
Target: 5'- gCUCCACGCUCCACGUCGUCUGGCAGCc -3' miRNA: 3'- -GAGGUGCGAGGUGCAGCAGACCGUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home