miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31773 3' -51.3 NC_006938.1 + 7016 0.66 0.948115
Target:  5'- uCGUCGUCCACAuggcacAGCUCaauccGAGUGGc -3'
miRNA:   3'- cGCAGUAGGUGU------UUGGGcaa--CUCGCC- -5'
31773 3' -51.3 NC_006938.1 + 25874 0.66 0.943365
Target:  5'- cGCGUCAUgUAUGuuuCUCGUUcgguccuugGAGCGGa -3'
miRNA:   3'- -CGCAGUAgGUGUuu-GGGCAA---------CUCGCC- -5'
31773 3' -51.3 NC_006938.1 + 55132 0.66 0.943365
Target:  5'- uGCGUCAcuUCCAgGAcGCCCug-GAGCa- -3'
miRNA:   3'- -CGCAGU--AGGUgUU-UGGGcaaCUCGcc -5'
31773 3' -51.3 NC_006938.1 + 27560 0.66 0.927458
Target:  5'- gGCcUgGUUgGCGAugCCGUUGAugGCGGu -3'
miRNA:   3'- -CGcAgUAGgUGUUugGGCAACU--CGCC- -5'
31773 3' -51.3 NC_006938.1 + 31020 0.67 0.917949
Target:  5'- uGCGUCGUCCGCAggcagGacaucauggagguguACCCcuccaGAGUGGg -3'
miRNA:   3'- -CGCAGUAGGUGU-----U---------------UGGGcaa--CUCGCC- -5'
31773 3' -51.3 NC_006938.1 + 23231 0.67 0.915461
Target:  5'- aCGUCAUggGCGGACCCuucGAGUGGu -3'
miRNA:   3'- cGCAGUAggUGUUUGGGcaaCUCGCC- -5'
31773 3' -51.3 NC_006938.1 + 23991 0.67 0.914832
Target:  5'- aCGUCGUCCGagaagucgacggcCGAGaCCGUgcGAGCGGu -3'
miRNA:   3'- cGCAGUAGGU-------------GUUUgGGCAa-CUCGCC- -5'
31773 3' -51.3 NC_006938.1 + 4235 0.67 0.911645
Target:  5'- uCGUCAUCCGCGAACuccaucgcguccucgCCGacguucaccUUGAGCa- -3'
miRNA:   3'- cGCAGUAGGUGUUUG---------------GGC---------AACUCGcc -5'
31773 3' -51.3 NC_006938.1 + 52056 0.67 0.909046
Target:  5'- cGCGUCGUCCGCGcuguccAACuUCGU---GCGGa -3'
miRNA:   3'- -CGCAGUAGGUGU------UUG-GGCAacuCGCC- -5'
31773 3' -51.3 NC_006938.1 + 38219 0.68 0.888162
Target:  5'- cGCGUCAcgCGCAGACCCGgcu--CGGa -3'
miRNA:   3'- -CGCAGUagGUGUUUGGGCaacucGCC- -5'
31773 3' -51.3 NC_006938.1 + 11524 0.68 0.887425
Target:  5'- gGCGgccgaCAUCCACAAGCaguacuuCCG-UGGGCGu -3'
miRNA:   3'- -CGCa----GUAGGUGUUUG-------GGCaACUCGCc -5'
31773 3' -51.3 NC_006938.1 + 39306 0.68 0.880668
Target:  5'- cGCGaCuUCCugGAACCgGgucuacccgGAGCGGa -3'
miRNA:   3'- -CGCaGuAGGugUUUGGgCaa-------CUCGCC- -5'
31773 3' -51.3 NC_006938.1 + 53335 0.68 0.872917
Target:  5'- cGCGcUGUCCACgAAGCCC--UGGGCGa -3'
miRNA:   3'- -CGCaGUAGGUG-UUUGGGcaACUCGCc -5'
31773 3' -51.3 NC_006938.1 + 15443 0.69 0.845589
Target:  5'- cGCGUCGUcgugcagaugugggCCGCuGGCCuCGaccagGAGCGGg -3'
miRNA:   3'- -CGCAGUA--------------GGUGuUUGG-GCaa---CUCGCC- -5'
31773 3' -51.3 NC_006938.1 + 55204 0.69 0.802507
Target:  5'- cGCGUCcgccgCCGCGAuccagaucuGgCCGUUGAGCaGGc -3'
miRNA:   3'- -CGCAGua---GGUGUU---------UgGGCAACUCG-CC- -5'
31773 3' -51.3 NC_006938.1 + 32584 0.7 0.782907
Target:  5'- cGCuGUCGUgCCACGAccaACCCGUacGGGcCGGg -3'
miRNA:   3'- -CG-CAGUA-GGUGUU---UGGGCAa-CUC-GCC- -5'
31773 3' -51.3 NC_006938.1 + 52668 0.72 0.666284
Target:  5'- aGCGaCugggCC-CAGACCCGUgggGAGUGGg -3'
miRNA:   3'- -CGCaGua--GGuGUUUGGGCAa--CUCGCC- -5'
31773 3' -51.3 NC_006938.1 + 46588 0.72 0.64422
Target:  5'- uCGUCGUCCGCGuugAugCCGUUGGcaCGGa -3'
miRNA:   3'- cGCAGUAGGUGU---UugGGCAACUc-GCC- -5'
31773 3' -51.3 NC_006938.1 + 21250 0.73 0.615483
Target:  5'- aCGUCGaucccUCCGCcGACCCGUcgcuguucgacgcgGAGCGGa -3'
miRNA:   3'- cGCAGU-----AGGUGuUUGGGCAa-------------CUCGCC- -5'
31773 3' -51.3 NC_006938.1 + 1194 0.73 0.611066
Target:  5'- cGCGUCGUCCACcugagccgAGGCCCcGUUGAagGUGa -3'
miRNA:   3'- -CGCAGUAGGUG--------UUUGGG-CAACU--CGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.