miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31773 5' -55.1 NC_006938.1 + 7160 0.66 0.779658
Target:  5'- -cCCGcUGGAGaCGGCGaaugGCCGAg- -3'
miRNA:   3'- guGGCaACCUU-GCCGCgaa-CGGCUac -5'
31773 5' -55.1 NC_006938.1 + 28007 0.66 0.738963
Target:  5'- gCGCCcUUGGcaaGGCGGCGCUUGaucuggucagCGAUGu -3'
miRNA:   3'- -GUGGcAACC---UUGCCGCGAACg---------GCUAC- -5'
31773 5' -55.1 NC_006938.1 + 15380 0.67 0.717933
Target:  5'- uCGCCcgUGGGAUuGgGCUUGCCGAg- -3'
miRNA:   3'- -GUGGcaACCUUGcCgCGAACGGCUac -5'
31773 5' -55.1 NC_006938.1 + 54498 0.67 0.695493
Target:  5'- -uCCGUUGGGACGGaggguggagaaguCGUa-GCCGAUGc -3'
miRNA:   3'- guGGCAACCUUGCC-------------GCGaaCGGCUAC- -5'
31773 5' -55.1 NC_006938.1 + 35057 0.68 0.664087
Target:  5'- gGCC----GAGCGGCGCUUGCCa--- -3'
miRNA:   3'- gUGGcaacCUUGCCGCGAACGGcuac -5'
31773 5' -55.1 NC_006938.1 + 17984 0.68 0.631339
Target:  5'- gGCCGUgUGGGACcuggagucaaaGGUGCUuccggUGCUGGUGa -3'
miRNA:   3'- gUGGCA-ACCUUG-----------CCGCGA-----ACGGCUAC- -5'
31773 5' -55.1 NC_006938.1 + 44386 0.68 0.624782
Target:  5'- gCAgCGUUGGAGCaGCGauuguuggaaagGCCGGUGg -3'
miRNA:   3'- -GUgGCAACCUUGcCGCgaa---------CGGCUAC- -5'
31773 5' -55.1 NC_006938.1 + 12146 0.68 0.620411
Target:  5'- gCAUUGUUGGcAGCGGCGgCgaugGCCGGc- -3'
miRNA:   3'- -GUGGCAACC-UUGCCGC-Gaa--CGGCUac -5'
31773 5' -55.1 NC_006938.1 + 13189 0.7 0.544693
Target:  5'- cCACCGggagUGGGACaGGCGCgu-CCGGUc -3'
miRNA:   3'- -GUGGCa---ACCUUG-CCGCGaacGGCUAc -5'
31773 5' -55.1 NC_006938.1 + 3969 0.7 0.513098
Target:  5'- cCGCCGUUGaa--GGUGCUUGCCGc-- -3'
miRNA:   3'- -GUGGCAACcuugCCGCGAACGGCuac -5'
31773 5' -55.1 NC_006938.1 + 9266 1.08 0.001534
Target:  5'- cCACCGUUGGAACGGCGCUUGCCGAUGu -3'
miRNA:   3'- -GUGGCAACCUUGCCGCGAACGGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.