miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31774 3' -53.4 NC_006938.1 + 58438 0.66 0.873512
Target:  5'- cUCAGaUCCAG-GAGGAcgUCAACGcGGa -3'
miRNA:   3'- -AGUCaGGGUCaCUCCUa-GGUUGCuCC- -5'
31774 3' -53.4 NC_006938.1 + 43048 0.66 0.873512
Target:  5'- cUCAGUCCCGuuUGAc--UCCGACGAGa -3'
miRNA:   3'- -AGUCAGGGUc-ACUccuAGGUUGCUCc -5'
31774 3' -53.4 NC_006938.1 + 3300 0.66 0.865603
Target:  5'- -aGGUCgCCuGUGAGGucccacucGUCCGuucccaccuugACGAGGg -3'
miRNA:   3'- agUCAG-GGuCACUCC--------UAGGU-----------UGCUCC- -5'
31774 3' -53.4 NC_006938.1 + 43552 0.67 0.81337
Target:  5'- gCAGUCCUgcuGUGAGGAuggcguucggcUCC-GCGuGGa -3'
miRNA:   3'- aGUCAGGGu--CACUCCU-----------AGGuUGCuCC- -5'
31774 3' -53.4 NC_006938.1 + 18015 0.67 0.794352
Target:  5'- cCGGUgCUGGUGAGGAUgcgaCAGCGcGGc -3'
miRNA:   3'- aGUCAgGGUCACUCCUAg---GUUGCuCC- -5'
31774 3' -53.4 NC_006938.1 + 10323 0.67 0.793382
Target:  5'- gUCGGUUCgGGUGAcGcgCCAgauugugGCGAGGg -3'
miRNA:   3'- -AGUCAGGgUCACUcCuaGGU-------UGCUCC- -5'
31774 3' -53.4 NC_006938.1 + 46703 0.68 0.75439
Target:  5'- --cGUCCuCGGgaguuggGAGGcgcacUCCAACGAGGa -3'
miRNA:   3'- aguCAGG-GUCa------CUCCu----AGGUUGCUCC- -5'
31774 3' -53.4 NC_006938.1 + 10152 0.69 0.723084
Target:  5'- gUCGGUCUCGGUGAGGGcacugcugUCCAggaagcccaggACGuccAGGu -3'
miRNA:   3'- -AGUCAGGGUCACUCCU--------AGGU-----------UGC---UCC- -5'
31774 3' -53.4 NC_006938.1 + 60152 0.69 0.712455
Target:  5'- cCAGUCCCGGUGGaca-CCGuugggcGCGAGGa -3'
miRNA:   3'- aGUCAGGGUCACUccuaGGU------UGCUCC- -5'
31774 3' -53.4 NC_006938.1 + 25937 0.69 0.70925
Target:  5'- gUCAcGcUCCUuGUGAGGGcugccaccugucgcUCCAGCGGGGc -3'
miRNA:   3'- -AGU-C-AGGGuCACUCCU--------------AGGUUGCUCC- -5'
31774 3' -53.4 NC_006938.1 + 42172 0.72 0.517748
Target:  5'- cCGGUCCUGGa-AGGGUCCGaucuGCGAGGu -3'
miRNA:   3'- aGUCAGGGUCacUCCUAGGU----UGCUCC- -5'
31774 3' -53.4 NC_006938.1 + 22412 0.73 0.446829
Target:  5'- cUCGGUCCCgcgcGGcGaAGGAgCCAGCGGGGa -3'
miRNA:   3'- -AGUCAGGG----UCaC-UCCUaGGUUGCUCC- -5'
31774 3' -53.4 NC_006938.1 + 53944 0.77 0.278497
Target:  5'- -aGGUCCCAGUcGAaGGUCCAGCGGGa -3'
miRNA:   3'- agUCAGGGUCA-CUcCUAGGUUGCUCc -5'
31774 3' -53.4 NC_006938.1 + 8503 1.12 0.001322
Target:  5'- gUCAGUCCCAGUGAGGAUCCAACGAGGa -3'
miRNA:   3'- -AGUCAGGGUCACUCCUAGGUUGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.