Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31774 | 5' | -58.7 | NC_006938.1 | + | 40827 | 0.66 | 0.603101 |
Target: 5'- aAGCGCcgggAGUCGGga-CCggCCGGGaCCa -3' miRNA: 3'- -UCGCG----UCAGCUaggGGaaGGCCCaGG- -5' |
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31774 | 5' | -58.7 | NC_006938.1 | + | 10070 | 0.66 | 0.561196 |
Target: 5'- uGCGUAGUUG-UCCCUgcgaCaGGUCCg -3' miRNA: 3'- uCGCGUCAGCuAGGGGaag-GcCCAGG- -5' |
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31774 | 5' | -58.7 | NC_006938.1 | + | 45888 | 0.66 | 0.602047 |
Target: 5'- aAGCgGCAuGUCGAUgCCCUcgcccaggcccagUCCaGGUCg -3' miRNA: 3'- -UCG-CGU-CAGCUAgGGGA-------------AGGcCCAGg -5' |
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31774 | 5' | -58.7 | NC_006938.1 | + | 41780 | 0.66 | 0.613654 |
Target: 5'- gAGCGggaGGgauacCGGUCCggguugUCCGGGUCCa -3' miRNA: 3'- -UCGCg--UCa----GCUAGGgga---AGGCCCAGG- -5' |
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31774 | 5' | -58.7 | NC_006938.1 | + | 36981 | 0.66 | 0.603101 |
Target: 5'- gAGCGCGGacggcUCuGAUCCUCaugcugUCCGaGGUCa -3' miRNA: 3'- -UCGCGUC-----AG-CUAGGGGa-----AGGC-CCAGg -5' |
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31774 | 5' | -58.7 | NC_006938.1 | + | 35769 | 0.66 | 0.561196 |
Target: 5'- uGCuGCAGUCGAUCgugaccacccguCCCUUCgaGGGgcagaCCa -3' miRNA: 3'- uCG-CGUCAGCUAG------------GGGAAGg-CCCa----GG- -5' |
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31774 | 5' | -58.7 | NC_006938.1 | + | 59509 | 0.67 | 0.500033 |
Target: 5'- uGGCGCGG-CGGaugccagCCUCgUCCGGG-CCa -3' miRNA: 3'- -UCGCGUCaGCUa------GGGGaAGGCCCaGG- -5' |
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31774 | 5' | -58.7 | NC_006938.1 | + | 48423 | 0.67 | 0.54053 |
Target: 5'- gAGCGa---CGAccgCCCCUccguUCCGGGUCUc -3' miRNA: 3'- -UCGCgucaGCUa--GGGGA----AGGCCCAGG- -5' |
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31774 | 5' | -58.7 | NC_006938.1 | + | 43840 | 0.67 | 0.54053 |
Target: 5'- cGgGCAG-CGGUggCUggUCCGGGUCCg -3' miRNA: 3'- uCgCGUCaGCUAggGGa-AGGCCCAGG- -5' |
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31774 | 5' | -58.7 | NC_006938.1 | + | 62390 | 0.68 | 0.491102 |
Target: 5'- cGCGCAGUCucgguucggaggcaaGUCUCUUguccUCGGGUCCg -3' miRNA: 3'- uCGCGUCAGc--------------UAGGGGAa---GGCCCAGG- -5' |
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31774 | 5' | -58.7 | NC_006938.1 | + | 42104 | 0.7 | 0.34639 |
Target: 5'- --aGCAGU-GGUCCCCg-CCGaGGUCCg -3' miRNA: 3'- ucgCGUCAgCUAGGGGaaGGC-CCAGG- -5' |
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31774 | 5' | -58.7 | NC_006938.1 | + | 41058 | 0.73 | 0.223897 |
Target: 5'- gAGCGCAcUCGccUCCuCCguggCCGGGUCCu -3' miRNA: 3'- -UCGCGUcAGCu-AGG-GGaa--GGCCCAGG- -5' |
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31774 | 5' | -58.7 | NC_006938.1 | + | 8540 | 1.12 | 0.000393 |
Target: 5'- cAGCGCAGUCGAUCCCCUUCCGGGUCCg -3' miRNA: 3'- -UCGCGUCAGCUAGGGGAAGGCCCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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