miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31775 3' -55.1 NC_006938.1 + 2361 0.67 0.726233
Target:  5'- aCCAGACcaaGGCCGUCGcCGAcAugGc -3'
miRNA:   3'- -GGUCUGca-CCGGCAGCuGCUcUugCa -5'
31775 3' -55.1 NC_006938.1 + 4830 0.67 0.76673
Target:  5'- aCCuGGCaccGGCCGaggaguUCGGCGAGGugGUc -3'
miRNA:   3'- -GGuCUGca-CCGGC------AGCUGCUCUugCA- -5'
31775 3' -55.1 NC_006938.1 + 5244 0.69 0.620205
Target:  5'- cUCGGagaccGCGUGGCUGUUGACGA--ACGg -3'
miRNA:   3'- -GGUC-----UGCACCGGCAGCUGCUcuUGCa -5'
31775 3' -55.1 NC_006938.1 + 5360 0.72 0.46497
Target:  5'- cCCAGACGuUGGUCGUgggagaccCGACGAGcgccACGUu -3'
miRNA:   3'- -GGUCUGC-ACCGGCA--------GCUGCUCu---UGCA- -5'
31775 3' -55.1 NC_006938.1 + 5760 1.1 0.001339
Target:  5'- aCCAGACGUGGCCGUCGACGAGAACGUg -3'
miRNA:   3'- -GGUCUGCACCGGCAGCUGCUCUUGCA- -5'
31775 3' -55.1 NC_006938.1 + 9678 0.72 0.436225
Target:  5'- --cGACgGUGGCgGUUGGCGAGAACu- -3'
miRNA:   3'- gguCUG-CACCGgCAGCUGCUCUUGca -5'
31775 3' -55.1 NC_006938.1 + 12093 0.7 0.577535
Target:  5'- cCCcGGCuccGGCCG-CGACGAGGAUGUc -3'
miRNA:   3'- -GGuCUGca-CCGGCaGCUGCUCUUGCA- -5'
31775 3' -55.1 NC_006938.1 + 14613 0.67 0.736518
Target:  5'- gCCAGAUGgcUGGCUGcCGACGgucgGGAACc- -3'
miRNA:   3'- -GGUCUGC--ACCGGCaGCUGC----UCUUGca -5'
31775 3' -55.1 NC_006938.1 + 15163 0.67 0.736518
Target:  5'- gUAGGcCGUGGCCGccucgaUCGugGAGAcagugccgACGg -3'
miRNA:   3'- gGUCU-GCACCGGC------AGCugCUCU--------UGCa -5'
31775 3' -55.1 NC_006938.1 + 15454 0.68 0.705409
Target:  5'- gCAGAUGUgGGCCGcuggccUCGACcaGGAGCGg -3'
miRNA:   3'- gGUCUGCA-CCGGC------AGCUGc-UCUUGCa -5'
31775 3' -55.1 NC_006938.1 + 17891 0.67 0.726233
Target:  5'- cCCGcuAUGUGGgCGUcuaCGGCGAGGACGa -3'
miRNA:   3'- -GGUc-UGCACCgGCA---GCUGCUCUUGCa -5'
31775 3' -55.1 NC_006938.1 + 18132 0.66 0.786234
Target:  5'- aCCGG-UGUGGCgGUgGGaccCGAGGACGc -3'
miRNA:   3'- -GGUCuGCACCGgCAgCU---GCUCUUGCa -5'
31775 3' -55.1 NC_006938.1 + 18809 0.72 0.484671
Target:  5'- aCAGAagaugGUGGUCGcgggCGACGAGGGCGc -3'
miRNA:   3'- gGUCUg----CACCGGCa---GCUGCUCUUGCa -5'
31775 3' -55.1 NC_006938.1 + 21141 0.69 0.620205
Target:  5'- gCAGGCGUcgcuccGGCCGcgUCGGCGaAGAACu- -3'
miRNA:   3'- gGUCUGCA------CCGGC--AGCUGC-UCUUGca -5'
31775 3' -55.1 NC_006938.1 + 22277 0.66 0.795763
Target:  5'- gCCu-GCcaGGCCGUCGcCGGGAGCGc -3'
miRNA:   3'- -GGucUGcaCCGGCAGCuGCUCUUGCa -5'
31775 3' -55.1 NC_006938.1 + 23583 0.76 0.267191
Target:  5'- gCCAGACGUGaaGCCGUgGGCGAcGGAgGUg -3'
miRNA:   3'- -GGUCUGCAC--CGGCAgCUGCU-CUUgCA- -5'
31775 3' -55.1 NC_006938.1 + 23986 0.76 0.294808
Target:  5'- cCCGGACG-GuGCCugguUCGACGAGGACGg -3'
miRNA:   3'- -GGUCUGCaC-CGGc---AGCUGCUCUUGCa -5'
31775 3' -55.1 NC_006938.1 + 25660 0.7 0.577535
Target:  5'- uCCAGGCGUGGgucaCGcCGAgCGAGAcACGg -3'
miRNA:   3'- -GGUCUGCACCg---GCaGCU-GCUCU-UGCa -5'
31775 3' -55.1 NC_006938.1 + 27036 0.7 0.588158
Target:  5'- --cGACG-GGCCagGUCGGCGAGAGgGa -3'
miRNA:   3'- gguCUGCaCCGG--CAGCUGCUCUUgCa -5'
31775 3' -55.1 NC_006938.1 + 29493 0.74 0.381962
Target:  5'- gCCAGGCGcgcaGGCCGUCG-UGAGGAgGa -3'
miRNA:   3'- -GGUCUGCa---CCGGCAGCuGCUCUUgCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.