miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31775 5' -58.9 NC_006938.1 + 12895 0.66 0.564041
Target:  5'- cGGGG-CCUCUcCCGCCUCCuuGGGcUCGa -3'
miRNA:   3'- cCUCUaGGGGA-GGUGGAGGu-CCC-AGU- -5'
31775 5' -58.9 NC_006938.1 + 46144 0.66 0.552597
Target:  5'- cGAGAUCgaaggccaCCCUCCGCgCUCCcuuccaggaggggAGGGUgGa -3'
miRNA:   3'- cCUCUAG--------GGGAGGUG-GAGG-------------UCCCAgU- -5'
31775 5' -58.9 NC_006938.1 + 31045 0.67 0.533002
Target:  5'- uGGAGGUguaCCCCUCCAgagugggCCAGuuGGUCAg -3'
miRNA:   3'- -CCUCUA---GGGGAGGUgga----GGUC--CCAGU- -5'
31775 5' -58.9 NC_006938.1 + 22981 0.67 0.522789
Target:  5'- uGAGGUCCUCgaCCgagGCCUCCAGGaUCu -3'
miRNA:   3'- cCUCUAGGGGa-GG---UGGAGGUCCcAGu -5'
31775 5' -58.9 NC_006938.1 + 44898 0.67 0.506608
Target:  5'- uGGAGAUCCCggcaugUCCGCCaucaucuggugguugUCCGuguccGGGUCGu -3'
miRNA:   3'- -CCUCUAGGGg-----AGGUGG---------------AGGU-----CCCAGU- -5'
31775 5' -58.9 NC_006938.1 + 15095 0.68 0.434898
Target:  5'- cGAGGUCUCgCg-UACCUCCGGGaGUCAg -3'
miRNA:   3'- cCUCUAGGG-GagGUGGAGGUCC-CAGU- -5'
31775 5' -58.9 NC_006938.1 + 8549 0.71 0.312498
Target:  5'- --cGAUCCCCuUCCggguccgacccugguGCCUCCAGGGa-- -3'
miRNA:   3'- ccuCUAGGGG-AGG---------------UGGAGGUCCCagu -5'
31775 5' -58.9 NC_006938.1 + 40365 0.72 0.248556
Target:  5'- --uGGUCCCUgcaCuCCUCCAGGGUCGg -3'
miRNA:   3'- ccuCUAGGGGag-GuGGAGGUCCCAGU- -5'
31775 5' -58.9 NC_006938.1 + 6133 0.77 0.126333
Target:  5'- cGGAGAUCCgCUcuggaagcUCCACCUCCuGGGUg- -3'
miRNA:   3'- -CCUCUAGG-GG--------AGGUGGAGGuCCCAgu -5'
31775 5' -58.9 NC_006938.1 + 5798 1.11 0.000436
Target:  5'- cGGAGAUCCCCUCCACCUCCAGGGUCAg -3'
miRNA:   3'- -CCUCUAGGGGAGGUGGAGGUCCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.