Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31776 | 5' | -57 | NC_006938.1 | + | 4522 | 0.66 | 0.673741 |
Target: 5'- gGUCAGGgugauuCCAGCCGUcggaggggaggcaccGUCGUCGGc-- -3' miRNA: 3'- gCGGUCC------GGUCGGCA---------------UAGCAGCUaca -5' |
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31776 | 5' | -57 | NC_006938.1 | + | 31727 | 0.66 | 0.669456 |
Target: 5'- aGCCAGGgCAGCCGg--UGUCu---- -3' miRNA: 3'- gCGGUCCgGUCGGCauaGCAGcuaca -5' |
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31776 | 5' | -57 | NC_006938.1 | + | 20577 | 0.67 | 0.583454 |
Target: 5'- uCGCCAGGUC-GUCG-AUCGUCG-UGc -3' miRNA: 3'- -GCGGUCCGGuCGGCaUAGCAGCuACa -5' |
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31776 | 5' | -57 | NC_006938.1 | + | 28282 | 0.67 | 0.583454 |
Target: 5'- aGCCAGGauuguacuggCAGUCgGUGUCGUCGAg-- -3' miRNA: 3'- gCGGUCCg---------GUCGG-CAUAGCAGCUaca -5' |
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31776 | 5' | -57 | NC_006938.1 | + | 26833 | 0.68 | 0.562171 |
Target: 5'- aGCCA-GCCGguuGCCGaUGUCGUCGAc-- -3' miRNA: 3'- gCGGUcCGGU---CGGC-AUAGCAGCUaca -5' |
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31776 | 5' | -57 | NC_006938.1 | + | 56063 | 0.68 | 0.551607 |
Target: 5'- gGCCGGauGCCAGCCac-UCGUCGAc-- -3' miRNA: 3'- gCGGUC--CGGUCGGcauAGCAGCUaca -5' |
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31776 | 5' | -57 | NC_006938.1 | + | 40123 | 0.68 | 0.530668 |
Target: 5'- gCGCC-GGUCAGCCGgg-UGUCGcgGc -3' miRNA: 3'- -GCGGuCCGGUCGGCauaGCAGCuaCa -5' |
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31776 | 5' | -57 | NC_006938.1 | + | 28658 | 0.68 | 0.520307 |
Target: 5'- gGaCCAGGUCGGCCGgggcgaacgUGUUGUCGAc-- -3' miRNA: 3'- gC-GGUCCGGUCGGC---------AUAGCAGCUaca -5' |
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31776 | 5' | -57 | NC_006938.1 | + | 51487 | 0.69 | 0.489728 |
Target: 5'- aGCCGGGgCAGUCGaggcgAUCGUCGccgcGUGg -3' miRNA: 3'- gCGGUCCgGUCGGCa----UAGCAGC----UACa -5' |
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31776 | 5' | -57 | NC_006938.1 | + | 15694 | 0.69 | 0.469814 |
Target: 5'- gGUCGGGUCGGCCGUG--GUCGAc-- -3' miRNA: 3'- gCGGUCCGGUCGGCAUagCAGCUaca -5' |
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31776 | 5' | -57 | NC_006938.1 | + | 48211 | 0.69 | 0.466862 |
Target: 5'- cCGCCAGcGCCAGCCGUaggcuccccacaugGucucuccgUCGUCGGa-- -3' miRNA: 3'- -GCGGUC-CGGUCGGCA--------------U--------AGCAGCUaca -5' |
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31776 | 5' | -57 | NC_006938.1 | + | 14181 | 0.71 | 0.351819 |
Target: 5'- uGCCAccGGCUcGCCGUcAUCGUCGAUc- -3' miRNA: 3'- gCGGU--CCGGuCGGCA-UAGCAGCUAca -5' |
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31776 | 5' | -57 | NC_006938.1 | + | 5651 | 1.07 | 0.001101 |
Target: 5'- aCGCCAGGCCAGCCGUAUCGUCGAUGUc -3' miRNA: 3'- -GCGGUCCGGUCGGCAUAGCAGCUACA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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