Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31777 | 5' | -54.7 | NC_006938.1 | + | 95 | 0.69 | 0.603983 |
Target: 5'- uGggGACguucAGCUCGCgagCGGCCUGCu--- -3' miRNA: 3'- uCuuCUG----UCGAGCG---GCUGGACGuacu -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 2473 | 0.86 | 0.053668 |
Target: 5'- uGggGACAGcCUCGUCGAUCUGCGUGGc -3' miRNA: 3'- uCuuCUGUC-GAGCGGCUGGACGUACU- -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 4336 | 0.75 | 0.276776 |
Target: 5'- uGGAGACcgcGCUCGCCGAgCUGCGa-- -3' miRNA: 3'- uCUUCUGu--CGAGCGGCUgGACGUacu -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 4576 | 0.7 | 0.516359 |
Target: 5'- -uGAGGCAGCgCGCuggagcuCGGCCUGUGUGAc -3' miRNA: 3'- ucUUCUGUCGaGCG-------GCUGGACGUACU- -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 5429 | 1.09 | 0.001183 |
Target: 5'- cAGAAGACAGCUCGCCGACCUGCAUGAa -3' miRNA: 3'- -UCUUCUGUCGAGCGGCUGGACGUACU- -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 6097 | 0.66 | 0.766118 |
Target: 5'- aGGAagAGACGGC-C-CUGGCCgagGCAUGGg -3' miRNA: 3'- -UCU--UCUGUCGaGcGGCUGGa--CGUACU- -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 9147 | 0.66 | 0.765097 |
Target: 5'- cGAGGACAGUgguggccUCGacuCCGGCCgcgacaggugGCGUGAa -3' miRNA: 3'- uCUUCUGUCG-------AGC---GGCUGGa---------CGUACU- -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 9203 | 0.67 | 0.681085 |
Target: 5'- uAGAGGGC--CUCGCCGACCaGUAUc- -3' miRNA: 3'- -UCUUCUGucGAGCGGCUGGaCGUAcu -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 12552 | 0.67 | 0.702852 |
Target: 5'- cGguGGCAGCgucgaacgCGCCGacuGCCUGCAgGAc -3' miRNA: 3'- uCuuCUGUCGa-------GCGGC---UGGACGUaCU- -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 19142 | 0.69 | 0.582027 |
Target: 5'- gAGAAGAUcGCcgagaucaUGCgGACCUGCGUGGa -3' miRNA: 3'- -UCUUCUGuCGa-------GCGgCUGGACGUACU- -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 21497 | 0.66 | 0.765097 |
Target: 5'- aGGAuGGCAGCgccgaaggcaccgUCGUugaucgaGACCUGCGUGGu -3' miRNA: 3'- -UCUuCUGUCG-------------AGCGg------CUGGACGUACU- -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 23676 | 0.67 | 0.724341 |
Target: 5'- cGAAG-CAGCgcgaCGUCGGCCagggcgGCAUGGc -3' miRNA: 3'- uCUUCuGUCGa---GCGGCUGGa-----CGUACU- -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 39146 | 0.69 | 0.582027 |
Target: 5'- -uGAGACGGUagaggaugUCGCCGACCcugGuCAUGAc -3' miRNA: 3'- ucUUCUGUCG--------AGCGGCUGGa--C-GUACU- -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 41396 | 0.7 | 0.549426 |
Target: 5'- ---cGACgGGCUCGUCGGCCUGUgggucGUGGa -3' miRNA: 3'- ucuuCUG-UCGAGCGGCUGGACG-----UACU- -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 47848 | 0.67 | 0.702852 |
Target: 5'- --cAGGCGGCUCGCucccCGuCCUGCAg-- -3' miRNA: 3'- ucuUCUGUCGAGCG----GCuGGACGUacu -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 52191 | 0.67 | 0.724341 |
Target: 5'- uGGAGGCGGUgguggcaucuUCGgCGGCCUGUuugGUGGa -3' miRNA: 3'- uCUUCUGUCG----------AGCgGCUGGACG---UACU- -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 53629 | 0.66 | 0.766118 |
Target: 5'- aAGcGGAguGuCggGCCGACCUGgGUGAc -3' miRNA: 3'- -UCuUCUguC-GagCGGCUGGACgUACU- -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 55622 | 0.74 | 0.306056 |
Target: 5'- gAGAGGAgGuCUUGaCCGACCUGCAUGu -3' miRNA: 3'- -UCUUCUgUcGAGC-GGCUGGACGUACu -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 60267 | 0.71 | 0.445976 |
Target: 5'- cAGAAGAUGGCUCGCCagGGCUUGUcccaGUGc -3' miRNA: 3'- -UCUUCUGUCGAGCGG--CUGGACG----UACu -5' |
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31777 | 5' | -54.7 | NC_006938.1 | + | 61433 | 0.74 | 0.321563 |
Target: 5'- cAGuuGACGGCU-GCC-ACCUGCGUGAc -3' miRNA: 3'- -UCuuCUGUCGAgCGGcUGGACGUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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