Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31778 | 3' | -56.1 | NC_006938.1 | + | 2181 | 1.12 | 0.000732 |
Target: 5'- cCUAGGCUGACCCCGUCGAGGAAGACCu -3' miRNA: 3'- -GAUCCGACUGGGGCAGCUCCUUCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 2329 | 0.79 | 0.146655 |
Target: 5'- --cGGCggggagGACUCCGUCGAGGAcgaggucaaccAGACCa -3' miRNA: 3'- gauCCGa-----CUGGGGCAGCUCCU-----------UCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 23459 | 0.75 | 0.253975 |
Target: 5'- -cGGcGCUGuCCgCGUCGAGGAAGAgCu -3' miRNA: 3'- gaUC-CGACuGGgGCAGCUCCUUCUgG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 19927 | 0.73 | 0.35422 |
Target: 5'- --cGGCUu-CCCCGUCGgcguggaggacuccAGGGAGGCCu -3' miRNA: 3'- gauCCGAcuGGGGCAGC--------------UCCUUCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 36625 | 0.71 | 0.446182 |
Target: 5'- ---uGCUGugCgCCGUgGAGGGAGAUCc -3' miRNA: 3'- gaucCGACugG-GGCAgCUCCUUCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 33774 | 0.7 | 0.504477 |
Target: 5'- -cGGGCUGGCCCC-UCGGccgagccGGAuGGCUg -3' miRNA: 3'- gaUCCGACUGGGGcAGCU-------CCUuCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 22173 | 0.69 | 0.526021 |
Target: 5'- -cAGGCcGACgagCCCGUCGAGGcgaACCa -3' miRNA: 3'- gaUCCGaCUG---GGGCAGCUCCuucUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 9609 | 0.69 | 0.526021 |
Target: 5'- -gGGGCUGACuCCCGcuggaccuUCGAcuGGGACCu -3' miRNA: 3'- gaUCCGACUG-GGGC--------AGCUccUUCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 50622 | 0.69 | 0.557368 |
Target: 5'- -cAGGCgacaaagGAUCUuggaaCGUCGcAGGAGGACCu -3' miRNA: 3'- gaUCCGa------CUGGG-----GCAGC-UCCUUCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 55827 | 0.69 | 0.565822 |
Target: 5'- uCUGGGCUucGCuUCCGguucuacgacggCGGGGAGGACCa -3' miRNA: 3'- -GAUCCGAc-UG-GGGCa-----------GCUCCUUCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 28605 | 0.69 | 0.56794 |
Target: 5'- -cAGGCgaucGACCuCCGUCuGAaGGAGGCCc -3' miRNA: 3'- gaUCCGa---CUGG-GGCAG-CUcCUUCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 23084 | 0.68 | 0.589226 |
Target: 5'- --cGGCUGGCCCUGgUCGuccgucGGAGGAgUg -3' miRNA: 3'- gauCCGACUGGGGC-AGCu-----CCUUCUgG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 30798 | 0.68 | 0.589226 |
Target: 5'- --cGGCUGugCCU--UGAGGAGGAUg -3' miRNA: 3'- gauCCGACugGGGcaGCUCCUUCUGg -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 25582 | 0.68 | 0.620318 |
Target: 5'- cCUGGGCUucuucGCCgCCGUgucaacacucaacUGAGGAGGACa -3' miRNA: 3'- -GAUCCGAc----UGG-GGCA-------------GCUCCUUCUGg -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 33324 | 0.67 | 0.653638 |
Target: 5'- -aAGcGC--GCCggGUCGAGGAAGACCg -3' miRNA: 3'- gaUC-CGacUGGggCAGCUCCUUCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 27 | 0.67 | 0.675055 |
Target: 5'- --uGGCUcGACCaCCGUCGAcGcGGAGaguGCCa -3' miRNA: 3'- gauCCGA-CUGG-GGCAGCU-C-CUUC---UGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 5346 | 0.67 | 0.675055 |
Target: 5'- aUAGGCgaucACCUCccagacguugGUCGuGGGAGACCc -3' miRNA: 3'- gAUCCGac--UGGGG----------CAGCuCCUUCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 28702 | 0.67 | 0.675055 |
Target: 5'- uUGGGCgUGACCaCCaccuccUCGGGGuuGGCCc -3' miRNA: 3'- gAUCCG-ACUGG-GGc-----AGCUCCuuCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 56647 | 0.67 | 0.675055 |
Target: 5'- -gGGGaacGGCCCCGgcugggGAGGcAAGGCCg -3' miRNA: 3'- gaUCCga-CUGGGGCag----CUCC-UUCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 23236 | 0.67 | 0.675055 |
Target: 5'- aUGGGCgGACCCU-UCGAGuGGucggcGACCg -3' miRNA: 3'- gAUCCGaCUGGGGcAGCUC-CUu----CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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