miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31778 3' -56.1 NC_006938.1 + 28605 0.69 0.56794
Target:  5'- -cAGGCgaucGACCuCCGUCuGAaGGAGGCCc -3'
miRNA:   3'- gaUCCGa---CUGG-GGCAG-CUcCUUCUGG- -5'
31778 3' -56.1 NC_006938.1 + 55827 0.69 0.565822
Target:  5'- uCUGGGCUucGCuUCCGguucuacgacggCGGGGAGGACCa -3'
miRNA:   3'- -GAUCCGAc-UG-GGGCa-----------GCUCCUUCUGG- -5'
31778 3' -56.1 NC_006938.1 + 50622 0.69 0.557368
Target:  5'- -cAGGCgacaaagGAUCUuggaaCGUCGcAGGAGGACCu -3'
miRNA:   3'- gaUCCGa------CUGGG-----GCAGC-UCCUUCUGG- -5'
31778 3' -56.1 NC_006938.1 + 22173 0.69 0.526021
Target:  5'- -cAGGCcGACgagCCCGUCGAGGcgaACCa -3'
miRNA:   3'- gaUCCGaCUG---GGGCAGCUCCuucUGG- -5'
31778 3' -56.1 NC_006938.1 + 9609 0.69 0.526021
Target:  5'- -gGGGCUGACuCCCGcuggaccuUCGAcuGGGACCu -3'
miRNA:   3'- gaUCCGACUG-GGGC--------AGCUccUUCUGG- -5'
31778 3' -56.1 NC_006938.1 + 33774 0.7 0.504477
Target:  5'- -cGGGCUGGCCCC-UCGGccgagccGGAuGGCUg -3'
miRNA:   3'- gaUCCGACUGGGGcAGCU-------CCUuCUGG- -5'
31778 3' -56.1 NC_006938.1 + 36625 0.71 0.446182
Target:  5'- ---uGCUGugCgCCGUgGAGGGAGAUCc -3'
miRNA:   3'- gaucCGACugG-GGCAgCUCCUUCUGG- -5'
31778 3' -56.1 NC_006938.1 + 19927 0.73 0.35422
Target:  5'- --cGGCUu-CCCCGUCGgcguggaggacuccAGGGAGGCCu -3'
miRNA:   3'- gauCCGAcuGGGGCAGC--------------UCCUUCUGG- -5'
31778 3' -56.1 NC_006938.1 + 23459 0.75 0.253975
Target:  5'- -cGGcGCUGuCCgCGUCGAGGAAGAgCu -3'
miRNA:   3'- gaUC-CGACuGGgGCAGCUCCUUCUgG- -5'
31778 3' -56.1 NC_006938.1 + 2329 0.79 0.146655
Target:  5'- --cGGCggggagGACUCCGUCGAGGAcgaggucaaccAGACCa -3'
miRNA:   3'- gauCCGa-----CUGGGGCAGCUCCU-----------UCUGG- -5'
31778 3' -56.1 NC_006938.1 + 2181 1.12 0.000732
Target:  5'- cCUAGGCUGACCCCGUCGAGGAAGACCu -3'
miRNA:   3'- -GAUCCGACUGGGGCAGCUCCUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.