Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31779 | 3' | -51.9 | NC_006938.1 | + | 1923 | 1.1 | 0.002417 |
Target: 5'- uCGGGCAAAGUCACUCUCGUCCACAAGa -3' miRNA: 3'- -GCCCGUUUCAGUGAGAGCAGGUGUUC- -5' |
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31779 | 3' | -51.9 | NC_006938.1 | + | 2111 | 0.73 | 0.545369 |
Target: 5'- cCGGaCAGGGUCACUCcUGUCaCGCAGGu -3' miRNA: 3'- -GCCcGUUUCAGUGAGaGCAG-GUGUUC- -5' |
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31779 | 3' | -51.9 | NC_006938.1 | + | 48862 | 0.72 | 0.622608 |
Target: 5'- uGGGCA----CACccugCUCGUCCACGAGu -3' miRNA: 3'- gCCCGUuucaGUGa---GAGCAGGUGUUC- -5' |
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31779 | 3' | -51.9 | NC_006938.1 | + | 58868 | 0.71 | 0.633752 |
Target: 5'- aGGGacuuGAcUCGCUCUCGUCCACc-- -3' miRNA: 3'- gCCCgu--UUcAGUGAGAGCAGGUGuuc -5' |
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31779 | 3' | -51.9 | NC_006938.1 | + | 25818 | 0.71 | 0.663802 |
Target: 5'- aGGGCAucGUCguggGCcucggggaugaccuUCUUGUCCACGAGc -3' miRNA: 3'- gCCCGUuuCAG----UG--------------AGAGCAGGUGUUC- -5' |
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31779 | 3' | -51.9 | NC_006938.1 | + | 27334 | 0.68 | 0.813824 |
Target: 5'- aCGGGCGAG---ACgCUgGUCCGCGAGa -3' miRNA: 3'- -GCCCGUUUcagUGaGAgCAGGUGUUC- -5' |
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31779 | 3' | -51.9 | NC_006938.1 | + | 16022 | 0.68 | 0.813824 |
Target: 5'- uGGGCuuGGUUcg-CUUGUUCGCAAGg -3' miRNA: 3'- gCCCGuuUCAGugaGAGCAGGUGUUC- -5' |
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31779 | 3' | -51.9 | NC_006938.1 | + | 42807 | 0.68 | 0.813824 |
Target: 5'- gGGcGCGAAGuUCAC-CUUGUCCGCc-- -3' miRNA: 3'- gCC-CGUUUC-AGUGaGAGCAGGUGuuc -5' |
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31779 | 3' | -51.9 | NC_006938.1 | + | 28997 | 0.68 | 0.820413 |
Target: 5'- cCGGGCAu--UCGCUCcgacccuggccugcUCGUCCuGCAGGu -3' miRNA: 3'- -GCCCGUuucAGUGAG--------------AGCAGG-UGUUC- -5' |
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31779 | 3' | -51.9 | NC_006938.1 | + | 53215 | 0.68 | 0.832382 |
Target: 5'- aGGGaGAGGUCACaaccCUCG-CCACAAu -3' miRNA: 3'- gCCCgUUUCAGUGa---GAGCaGGUGUUc -5' |
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31779 | 3' | -51.9 | NC_006938.1 | + | 17015 | 0.67 | 0.866833 |
Target: 5'- aGGGCuucguGGAGUCACUCgcggucgUGUCCAg--- -3' miRNA: 3'- gCCCG-----UUUCAGUGAGa------GCAGGUguuc -5' |
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31779 | 3' | -51.9 | NC_006938.1 | + | 50763 | 0.67 | 0.87484 |
Target: 5'- gGGGCAcugcgcggcgacGAGcucCGCUC-CGUCCugGAGc -3' miRNA: 3'- gCCCGU------------UUCa--GUGAGaGCAGGugUUC- -5' |
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31779 | 3' | -51.9 | NC_006938.1 | + | 45653 | 0.67 | 0.87484 |
Target: 5'- gGGGCAGGG-CGCagUCGUCCuCGc- -3' miRNA: 3'- gCCCGUUUCaGUGagAGCAGGuGUuc -5' |
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31779 | 3' | -51.9 | NC_006938.1 | + | 19361 | 0.66 | 0.890076 |
Target: 5'- aGGGCAAGGUguUcCUCuUCCAgAAGa -3' miRNA: 3'- gCCCGUUUCAguGaGAGcAGGUgUUC- -5' |
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31779 | 3' | -51.9 | NC_006938.1 | + | 57128 | 0.66 | 0.910249 |
Target: 5'- aGGGCAucGcUCucaGCUCcaucguggaggacUUGUCCACGAGa -3' miRNA: 3'- gCCCGUuuC-AG---UGAG-------------AGCAGGUGUUC- -5' |
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31779 | 3' | -51.9 | NC_006938.1 | + | 30561 | 0.66 | 0.910903 |
Target: 5'- uGGGCGAuGUCG-UCaUCGUCaACAAGa -3' miRNA: 3'- gCCCGUUuCAGUgAG-AGCAGgUGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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