miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31779 5' -60.6 NC_006938.1 + 25764 0.66 0.474799
Target:  5'- uGCUCCGUGGuGGucuGGGCcACCUCCc- -3'
miRNA:   3'- uUGGGGUACU-CCu--CCCGcUGGAGGcu -5'
31779 5' -60.6 NC_006938.1 + 57964 0.66 0.474799
Target:  5'- uGGCCuCCuUGAGcuuggccucgaGAGcGGCGACCUCCu- -3'
miRNA:   3'- -UUGG-GGuACUC-----------CUC-CCGCUGGAGGcu -5'
31779 5' -60.6 NC_006938.1 + 2188 0.66 0.45552
Target:  5'- uGACCCCGUcGAGGAa---GACCUCCa- -3'
miRNA:   3'- -UUGGGGUA-CUCCUcccgCUGGAGGcu -5'
31779 5' -60.6 NC_006938.1 + 8121 0.66 0.43574
Target:  5'- gGACCCgAUGAGGAagccgaucugGGGCGagaagcccaggccGCCUgCGGc -3'
miRNA:   3'- -UUGGGgUACUCCU----------CCCGC-------------UGGAgGCU- -5'
31779 5' -60.6 NC_006938.1 + 56653 0.66 0.427416
Target:  5'- cGGCCCCGgcUGGGGAGGcaaGGCCggggCCGc -3'
miRNA:   3'- -UUGGGGU--ACUCCUCCcg-CUGGa---GGCu -5'
31779 5' -60.6 NC_006938.1 + 9183 0.67 0.409261
Target:  5'- cACCgCCGUGGcgcgcaGAuGGGCGuCCUCCGAg -3'
miRNA:   3'- uUGG-GGUACUc-----CU-CCCGCuGGAGGCU- -5'
31779 5' -60.6 NC_006938.1 + 32723 0.67 0.391594
Target:  5'- uGCCCCA-GAGaccucGGCGACCUCCu- -3'
miRNA:   3'- uUGGGGUaCUCcuc--CCGCUGGAGGcu -5'
31779 5' -60.6 NC_006938.1 + 21404 0.67 0.374431
Target:  5'- aAGCCCCucgGAGGAGGcGUGGgccgaCUUCGAg -3'
miRNA:   3'- -UUGGGGua-CUCCUCC-CGCUg----GAGGCU- -5'
31779 5' -60.6 NC_006938.1 + 5940 0.68 0.341665
Target:  5'- gAACCaguCCAUaGAGGAGGGC-ACCgaaauUCCGAu -3'
miRNA:   3'- -UUGG---GGUA-CUCCUCCCGcUGG-----AGGCU- -5'
31779 5' -60.6 NC_006938.1 + 6106 0.68 0.333804
Target:  5'- cGGCCCUGgccGAGGcauGGGGCGACUaugCCGGa -3'
miRNA:   3'- -UUGGGGUa--CUCC---UCCCGCUGGa--GGCU- -5'
31779 5' -60.6 NC_006938.1 + 17402 0.7 0.24984
Target:  5'- -uCCCCuccUGGaagggagcgcGGAGGGUGGCCUUCGAu -3'
miRNA:   3'- uuGGGGu--ACU----------CCUCCCGCUGGAGGCU- -5'
31779 5' -60.6 NC_006938.1 + 57764 0.73 0.161521
Target:  5'- uGACCCUGgagGuGGAGGG-GAUCUCCGAg -3'
miRNA:   3'- -UUGGGGUa--CuCCUCCCgCUGGAGGCU- -5'
31779 5' -60.6 NC_006938.1 + 1959 1.06 0.000554
Target:  5'- aAACCCCAUGAGGAGGGCGACCUCCGAg -3'
miRNA:   3'- -UUGGGGUACUCCUCCCGCUGGAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.