miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3178 5' -50.4 NC_001501.1 + 3612 0.66 0.42661
Target:  5'- aUGGgacAGcCACUAGUCAuuCuGGCCCCCc -3'
miRNA:   3'- cAUC---UCcGUGAUCAGUuuG-UUGGGGG- -5'
3178 5' -50.4 NC_001501.1 + 1883 0.66 0.404078
Target:  5'- -aAGGGGCACUGGgcuaaAGAUugUCCCa -3'
miRNA:   3'- caUCUCCGUGAUCag---UUUGuuGGGGg -5'
3178 5' -50.4 NC_001501.1 + 8257 0.66 0.404078
Target:  5'- gGUGGucccuGGGCAggGGUCucccgaucccGGACgAGCCCCCa -3'
miRNA:   3'- -CAUC-----UCCGUgaUCAG----------UUUG-UUGGGGG- -5'
3178 5' -50.4 NC_001501.1 + 3434 0.68 0.303355
Target:  5'- -aAG-GGC-UUAGUCAAaucugGCAACCCCa -3'
miRNA:   3'- caUCuCCGuGAUCAGUU-----UGUUGGGGg -5'
3178 5' -50.4 NC_001501.1 + 6755 0.7 0.216138
Target:  5'- uGUAGGGGCaACUAGaUAAuAgGACCCUCg -3'
miRNA:   3'- -CAUCUCCG-UGAUCaGUU-UgUUGGGGG- -5'
3178 5' -50.4 NC_001501.1 + 1972 0.7 0.209376
Target:  5'- -gGGAGGUcagGGUCAGG-AGCCCCCc -3'
miRNA:   3'- caUCUCCGugaUCAGUUUgUUGGGGG- -5'
3178 5' -50.4 NC_001501.1 + 852 0.72 0.151306
Target:  5'- -cGGGGGguCUucuguaaguaGGUCGAugaGCGGCCCCCc -3'
miRNA:   3'- caUCUCCguGA----------UCAGUU---UGUUGGGGG- -5'
3178 5' -50.4 NC_001501.1 + 3647 1.12 0.000125
Target:  5'- aGUAGAGGCACUAGUCAAACAACCCCCc -3'
miRNA:   3'- -CAUCUCCGUGAUCAGUUUGUUGGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.