miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31780 5' -59.2 NC_006938.1 + 1275 1.08 0.000608
Target:  5'- gUCCACCUGCGCGUCGAAGCCCAGGAGc -3'
miRNA:   3'- -AGGUGGACGCGCAGCUUCGGGUCCUC- -5'
31780 5' -59.2 NC_006938.1 + 57672 0.74 0.169845
Target:  5'- cUCCACCuUGCGC-UCGAacAGUCCGGGGa -3'
miRNA:   3'- -AGGUGG-ACGCGcAGCU--UCGGGUCCUc -5'
31780 5' -59.2 NC_006938.1 + 39661 0.74 0.183726
Target:  5'- gUCCGCCcGCGCGUCGAucacGCCCuuGAa -3'
miRNA:   3'- -AGGUGGaCGCGCAGCUu---CGGGucCUc -5'
31780 5' -59.2 NC_006938.1 + 26412 0.73 0.20909
Target:  5'- aUCCACgUGCGCaUCGAGGUgaAGGAGu -3'
miRNA:   3'- -AGGUGgACGCGcAGCUUCGggUCCUC- -5'
31780 5' -59.2 NC_006938.1 + 43426 0.72 0.248998
Target:  5'- -gCGCCUcgucccaGCGCugguuGUCgGAGGCCCAGGAGa -3'
miRNA:   3'- agGUGGA-------CGCG-----CAG-CUUCGGGUCCUC- -5'
31780 5' -59.2 NC_006938.1 + 15367 0.7 0.318477
Target:  5'- --gACCUGCGUGUUGucGCCCguGGGAu -3'
miRNA:   3'- aggUGGACGCGCAGCuuCGGG--UCCUc -5'
31780 5' -59.2 NC_006938.1 + 34750 0.7 0.326098
Target:  5'- cUgACCgUGCGCGUCGcGGCCCGGa-- -3'
miRNA:   3'- aGgUGG-ACGCGCAGCuUCGGGUCcuc -5'
31780 5' -59.2 NC_006938.1 + 9865 0.7 0.341742
Target:  5'- cCUAUCagGCcucCGUCGAgcuGGCCCAGGAGa -3'
miRNA:   3'- aGGUGGa-CGc--GCAGCU---UCGGGUCCUC- -5'
31780 5' -59.2 NC_006938.1 + 11832 0.69 0.357922
Target:  5'- cCCcUCUGgGCaUCGAAGCCCucGGAGa -3'
miRNA:   3'- aGGuGGACgCGcAGCUUCGGGu-CCUC- -5'
31780 5' -59.2 NC_006938.1 + 15124 0.69 0.373782
Target:  5'- cUCCGCCaucuugaUGCGgGU-GAAGUCCgAGGAGg -3'
miRNA:   3'- -AGGUGG-------ACGCgCAgCUUCGGG-UCCUC- -5'
31780 5' -59.2 NC_006938.1 + 45284 0.69 0.38318
Target:  5'- cCCACUUGCG-GagGcGGCCCAGGGc -3'
miRNA:   3'- aGGUGGACGCgCagCuUCGGGUCCUc -5'
31780 5' -59.2 NC_006938.1 + 54400 0.68 0.400665
Target:  5'- gCCACCUGuCGCGgcCGGAGUCgAGGc- -3'
miRNA:   3'- aGGUGGAC-GCGCa-GCUUCGGgUCCuc -5'
31780 5' -59.2 NC_006938.1 + 46444 0.68 0.408697
Target:  5'- aUCACCaGCGCGggagucacUCGAugacagcGGCCCAGGcAGa -3'
miRNA:   3'- aGGUGGaCGCGC--------AGCU-------UCGGGUCC-UC- -5'
31780 5' -59.2 NC_006938.1 + 1184 0.68 0.408697
Target:  5'- aCCGagaCUGCGCGUCGuccaccuGAGCCgAGGc- -3'
miRNA:   3'- aGGUg--GACGCGCAGC-------UUCGGgUCCuc -5'
31780 5' -59.2 NC_006938.1 + 11971 0.68 0.409596
Target:  5'- aCCGCCUcagccGCGUGUgGGAGCugauCCAGGGc -3'
miRNA:   3'- aGGUGGA-----CGCGCAgCUUCG----GGUCCUc -5'
31780 5' -59.2 NC_006938.1 + 5007 0.68 0.427824
Target:  5'- cCCACCgaUGCGCGUCcGAcGGaCCCAaGAGa -3'
miRNA:   3'- aGGUGG--ACGCGCAG-CU-UC-GGGUcCUC- -5'
31780 5' -59.2 NC_006938.1 + 33435 0.68 0.437116
Target:  5'- gUCCAaCUGCccGCG-CGAAcGCCCAGGcAGa -3'
miRNA:   3'- -AGGUgGACG--CGCaGCUU-CGGGUCC-UC- -5'
31780 5' -59.2 NC_006938.1 + 9113 0.67 0.485233
Target:  5'- --aACCUGU-CGUUGAAGUCCGGGGu -3'
miRNA:   3'- aggUGGACGcGCAGCUUCGGGUCCUc -5'
31780 5' -59.2 NC_006938.1 + 7117 0.67 0.495161
Target:  5'- cUCCAUgCUGUccGCGUCGAggAGCCCAaGGu- -3'
miRNA:   3'- -AGGUG-GACG--CGCAGCU--UCGGGU-CCuc -5'
31780 5' -59.2 NC_006938.1 + 41019 0.67 0.495161
Target:  5'- -gCACCuugucgcggaggUGgGCGUUGAAguuGCCCAGGAa -3'
miRNA:   3'- agGUGG------------ACgCGCAGCUU---CGGGUCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.